RNA id: XM_043223021.1


Basic Information

Item Value
RNA id XM_043223021.1
length 1360
RNA type mRNA
GC content 0.52
exon number 4
gene id tusc2b
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5803726 ~ 5806623 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGGTTCGAGCAGGAGCCGCTGAGCGTGTCTCGCTTCACCCTCGTCTGCTGCAGCGGTTCGCTTGTGAGTCACTTTACAGACTGAATAAATCTGTTCAAACCGACGTCGATTCGCCTTATTTCCGCTTCCTTGTTTAATTTAACACCAGGAGACCGCGTTCAAAGCCGTACGGCCGTCCCGAGTGAGACCTGAGCGGAAGGAGAATGATCCATGATGGGCGGCAGCGGCTCTAAAGGTAAAGGCTACTGGCCCTTCTCGGGTTCAGGTGGCGGGGATGAGCCTGCTAAAGACGGTCAGGAGCAGAGCCTGGCCCGGGTGCGGAGCATCCGAAACGCCACGCCTTTCGTGTTTACCAGGAGGAGctCTTTGTACTTCGACGAGGACGGCGACCTGGCCCACGAGTTTTATGAAGAAACGTTAGTAACGAAAAATGGCCGCAAGAAAGCCAAACTAAAACGAATCCACAAGAATCTCATACCTCAGgGAATCGTCAAGTTGGATCACCCTTGTATACACGTCGATTTTCCGGTCGTCATCTGTGAAGTTTGACGCCGTCGGTGACCTCCTGCGAAGAATCCGTCCCCCTCATTTTCCTCCCGCCCAGCTGGATCCCGAACACGCTCGCCGAGTAGCGCCCCCTTGTGTTTGGGAGGGCTTGAGGCGCGCGTGAGGAACCAGGCCAGCGAGCCGCGAGCTGCTCCGGCTGTGTGACTGAGAAGAGGCCGCggcctgatgatgatgatgatgatgatgtcctgactctttttgttttctcgtAATCCTCCGCACAAAGACTGCTATGGGCCGTGCGGCCGAGACACTAAGTGTGGTTTGTATGTgagtgtatgtttgtttgtatcTGACCATAGAAATTAGCCGATGTTTAGCGACGTCTGACGATCTTTCAGGAGCACGTCGTGAAGGACTCCGGAGGACCTTCTAGCACGTTCCATTTAGAATTTCAAAGAAGCCCTCGGAAGGATCGGGTCGCTTTTGAACGCTTTAATTGATGCGTTCGCAGATCGCGAGGACGCAGTCTTCGTAGAGGTTACGCGGTTAGGGTTAGTATAAAAgcgaggggggaaaaaaacaacagcctgGATTTTGCATGTCGACATGATTCTGCTTTCTTTTCAGCCGCTAGGAGAAAAATCAAAGGCTGTTTACTATgctgtgatttatttgtatGCTGATTGGATGATGGAATTGCTGCTGCTCTTTGATTGGACGGTCGAGGCACTGGCTGACACAGTGCTGCCAGTCACTGTGAGAAGCCCCGGCCCCTCGCACTGTCGTggctgtcatttatttattacagttaaaatgacGAGATGGCATTAAATACCACGTATAAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221702 lncRNA upstream 30717 5772335 ~ 5773042 (+) False rad54l2
TU221684 lncRNA upstream 40597 5758011 ~ 5763162 (+) True G149811
TU221682 lncRNA upstream 49946 5753494 ~ 5753813 (+) False G149810
TU221683 lncRNA upstream 50041 5753179 ~ 5753718 (+) True G149810
TU221681 lncRNA upstream 51263 5752232 ~ 5752496 (+) True G149809
TU221714 lncRNA downstream 16376 5822984 ~ 5824102 (+) False hyal2b
TU221723 lncRNA downstream 40560 5847168 ~ 5848586 (+) True lsm7
TU221724 lncRNA downstream 42384 5848992 ~ 5849918 (+) True G149829
TU221732 lncRNA downstream 76356 5882964 ~ 5885190 (+) True G149834
TU221752 lncRNA downstream 98225 5904833 ~ 5913295 (+) True G149846
XM_043222741.1 mRNA upstream 797 5794921 ~ 5802962 (+) True rassf1
XM_043222742.1 mRNA upstream 797 5799636 ~ 5802962 (+) False rassf1
XM_043222554.1 mRNA upstream 14369 5772442 ~ 5789390 (+) False rad54l2
XM_043222671.1 mRNA downstream 3870 5810478 ~ 5823918 (+) True hyal2b
XM_043222670.1 mRNA downstream 5413 5812021 ~ 5823918 (+) False hyal2b
XM_043222669.1 mRNA downstream 5511 5812119 ~ 5823918 (+) False hyal2b
XM_043222668.1 mRNA downstream 8504 5815112 ~ 5823918 (+) False hyal2b
XM_043222898.1 mRNA downstream 18496 5825104 ~ 5830334 (+) True abhd14a
XR_006247632.1 other upstream 61121 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 348332 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 699323 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 1087807 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1565690 4237454 ~ 4238069 (+) False LOC122327447
TU221722 other downstream 40560 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 385039 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 431679 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 696306 6502914 ~ 6507672 (+) False ccnt2b
TU222560 other downstream 901880 6708488 ~ 6708891 (+) True G150369

Expression Profile