RNA id: XM_043222552.1


Basic Information

Item Value
RNA id XM_043222552.1
length 6362
RNA type mRNA
GC content 0.53
exon number 22
gene id rad54l2
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5772335 ~ 5789390 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atatggtagaTTAATCAAAGTATATACTATTATcttctttataaatattattttatataattacagaTTATCAAGTGAAAAGTTAAAGTCGTCTAAATGGATTTAGGGTGTTTACTTTGCTATTTTATAACACGCTATAAACTGCttctaattatataataaattacataacaGGCAACAAATCAATTTACGTGAATGCAATAACATATTTTACACGtatatcataaaaaaacaatatttaattaacaaattaaacaacTATGCACGGCACCAAACTACTTTCatgattgtatatattattaaattatagtaAGTAAGACCTAGCTTGAACATTATTGccattttaacatattattgCCGTTTTATAACATATAACGCAACCTACAatgaaatgcatgtttattatgtaatgAATTATGTAATAGGCTTCTATGTGGTATAGTTTTACCTGTAACGTGTGCAATAATTTAACACAATGCTTAAAACATCAAAACGCACGCACAGCATCTCAAAacgaacaacaacaaaaaaaaaaagatgaaagcaCAAACTTCCCGATTGCCTTTATTCTGTCACGGACATTCTTGTCTCGGACTTCCTTCTGTAAGCGATCTGTCTGGATTCTTCCACGCATTTACACAACGCGCCACCTTGttgtatttacttttatgcAACCCGGGGGTGATTACGAAACGCGCGGAGCGCCTCTGAGCTGAGCCCCCCGGACCGCGCGAAGAGCGGAACCTTCAGAGCGAGTCTGTGCGCCGCGGAGGGCGTTTGAGGTCGCCGCTCCTGCTCAATtgatagataaaataaaagaatcgGGGAGTactacaacaacagcaaaaaaaaaatccacattaataatttaatgagtCGCCGCGCGGCCCGGGGATCCTAACGAGTGTGCGAAGAGGTGGTTTGACTGAAGATGTGTAAGTAATGCTCTTGGAGACCCAGGGGACGCCATGTCAGAAGAGGCGATCTCAGGGAGCGACCTGGAGCCCAGCCTTAACAgcgaggaggaagaggagatggaggaggaagaggatggaGAGAACGATGGGGACGACGAAGACGACGCCGCCGACCAGCTCGAGAGCCCCGAGGCCGAGGACCAAAGAGATCCTCCCAGCCCGGCACCTACCTCACCGACGTCTGGAGACTCCAGCCCTGACCCCGCCTCCCGGCCGCCCTCCCAGCCCTCGTCCACCTCGCGGACCGGCTCTCAGCCCCCGTCCAGCCCCGACAGCCGCAGCAACACGTCTGCCAACAGCAACACCAAGAAGAAGAAGTCCAAAACCTCTAAACCTGCTCACTTGAGGAGGAACATCCGGAAGGTCCTCAAGGAGCACCAGCTGGAAGCGGGAACCAAAGCCGCCCAGCAGGAGGAGCTCGAGCGACGGAGGCGTCTCGAACAGCAGCGGAAAGACTTCCCACTTCACGCGGATCTACCCACTGCGGCGCCGGGtcccaaacaggaagtgatctGTCTGGACAGCAGCGGAGACGAGGGCGAGGCTAAAGAAGCTCCGCCCCCTCAGCTGCCTGCCCACAGAGATGACGTGATTGAGCTGAGTTCAGGTGATGAAGACGCCCTGCGGATAAGCAGCGAGGAAGACAACAGCGAGGACCGCTCGGTCACTCCCGGCACCGACGAGAGCAGCGGCTCGCATGTGAACGACAGCCTCAATCAGCCAGACGCTCAGGGGAGAGTGCTGGTGAACATCAACCACCCCGGAGAGGAGGAGGACCTGTTCCTCGCCCCGCAGCTCGCCCGCGCCGTTAAACCGCACCAGATCGGTGGCATCCGTTTCCTGTACGACAACCTGGTGGAGTCTCTGGAGCGCTACAGGAGCAGCAGCGGCTTCGGCTGTATTCTGGCTCACAGCATGGGCCTGGGCAAAACCCTGCAGGTCATCTCCTTCATCGACGTCCTGCTGCGGCACACTGGAGCCAAAACGGTCCTCGCCATTGTACCCGTGAATACACTACAGAACTGGCTGGCTGAGTTTAACCTCTGGCTGCCTGCTGCTGAGACCCTTCCCCCCGACACCGATCCAGCCCAGGTTTTACCTCGAACCTTTAAGGTTCACATCCTCAATGATGAGCACAAAACCACAGTGGCCCGGGCCAAGGTGGTGGAGGACTGGACTCGTGACGGAGGGGTGCTGCTAATGGGCTATGAGATGTACCGCCTGCTGTCTCTCAAAAAGAGCTTTGTGACCGGCCGCAAGAGGAAGTCCAAGAAACCCGCGGGACCTGTCATTATAGACCTGGACGAGGAGGACCGGCAGCAGGAGCTCATGAAAGGGATCGAGAGAGCGATCTCGCGGCCCGGGCCGGACGTGGTCATATGCGACGAGGGCCACCGCATCAAAAACTGCCACGCCAGCACCTCGCAGGCCCTGAAGAACATCCGCTCCCGGCGGAGGGTGGTTCTGACCGGATACCCGCTGCAGAACAACCTGATCGAGTACTGGTGCATGGTGGATTTCGTCCGGCCTGATTTCCTCGGCACCCGGCAGGAGTTCAGTAACATGTTCGAGCGGCCCATCCTGAACGGCCAGTGTATAGACAGCACCCCGCAGGACGTCCAGCTCATGAGATACAGGAGCCACGTCCTGCACAGTCTGCTGGAGGGCTTCGTGCAGAGGCGAGGTCATGATGTCCTCCGAAATCAGCTTCCGGCGAAAGAGGAGCACGTGATCCTGGTACGACTGTCCCGCCTGCAGAGGGCGCTCTACACGGAGTTCATGAACCGCTTCAGGGAGGCGGGGAACACCGGGTGGCTCGGACTCAACCCGCTTAAAGCTTTCTGTGTTTGCTGCAAGATCTGGAATCATCCGGACGTTTTGTACGAGGCTCTGCAGAAGGAAAATCTGGCCAACGAGCAGGATCTTGACCTGGATGACCTCAACTCCACCAGCGGGACCCGCTGCTCCGCTCCGGGGATAAAGGGCAAGTCGTCCGACCCGGCCAACAGCAAGATGGCTGCTCTGGGACCCCTGAACCCCCTGCACGAGAAGGCCAACCAAGTCATCACATATGAATGGGCTAAAGACATCATGAGTAACTACCAGACCGGTGTTCTGGAGAACTCGGCCAAGATGGTTCTGCTTTTCCACCTGATCGACGAGAGCGTGAAGCGAGGAGATAAAATACTGGTTTTCAGTCAGAGTTTATCGACTCTTACGGTTATGGAAGATTTCCTGAGTCGGAGACCCTTGCCGATCCAAACAGAAGCTGGGACACACAACTGGGTCCGGAACATCAATTATTACAGGTTGGATGGGAGCACATCGgcttcagagagagaaagactcaTCAACCAGTTTAACGACCCGGGGAACACTCAAGCCTGGGTCTTCCTGCTCTCCACCAGGGCTGGTTGTTTGGGGGTGAATCTGATCGGCGCCAATCGCGTGGTGGTTTTTGACGCGTCGTGGAATCCGTGTCACGACGCTCAGGCCGTGTGCCGCGTTTATCGTTACGGCCAGCGCAAGCCCTGCCACATCTACAGGCTGGTGTGTGACTTCACGCTGGAGAAGAAGATCTACGACCGGCAGGTGTCCAAGCAGGGCATGTCTGATCGAGTCGTGGATGATTTGAACCCTGTCCTCAACTTCACGCGCAAGGAAGTGGAGTCGCTGCTGCACTTTGTGGAGGAGGAGCCTGATCCCAAACAATCAGAGCTGGTCCCTGGTGAGGACTTGGAAATCGTCATTAAACAAGCCTGCCTGTTATATCCAAACCTCTTAAGCAAGCAACCCTTCCATCACGAGTCCCTCCTGATGGACCGCAAGGATTTGAAACTGACCAAAGCGGAAAAGAGAGCAGCCAAGAAAAGCTACGAAGATGAGAAGCGGGCGTCCGTGCCGTATCAGCGGCCCTCTTACGCACATTACTACCCAGCTAGCGACCAGAGACTCACCAATATCCCTGCCTTCAGCCAGAGGAACTGGCGGCCCCCTCCTCATTTAGAAGAGAAACCAGTCGCAAGCGTGAGGCCGGTTCAGTCCACACCCATTCCCATGATGCCCCGACAGGTACCCATGGGCGTCCCCAGTTCAAGCGCGGGATTCCCCGTCAACTACCTGCAAAAGGCCGGCGTTTATGTCCAGCGCGTTGTCACCACCACTGATATTGTGATCCCAGGTTCCAACAGCAGCACGGATGTCCAAGCCCGGATCGGTGCGGGAGAGAGTATCCACGTTATCAGAGGATCCAAAGGCACGTACATCAGGACCAACGATGGGAGGATATTTGCCATTCGCTCTGGAAAGCCGAGACCACCGGAAGGAGGAGCCACAGCTTCAAGAGAGGACTCGTGCCCTCCCTTGCATTCTGTCAGTAACGGTCGTGCATCGCCTCAGGAGCCAAAACGTTTAACCCCCGAGACTCTGCCTCACCCTTCACCCCAAGACAGCCCCAAGTTGCTCCGAGAATTCCAGAGTAACAAGGACGCGGTTCCAGCAGGAGACGACTTGTCATCTTCAGGCACACCCGAACCCTCAGGAGCGGACAGACCCATGCAGAACCCAGTCCGCGTCCCCGACCAACACCGGCAGCTCGGCAATGACATCGTGTCATCTGTGGACGTTCAGAGTTTGAAGCGGAAGCTTTTGGAAAGTCGGACATCCAAACCACCGAGCACCAAACGGACCTCAACGTCAGCCGGTGCAGCTGGGAGCTACCCGGGATTTCCTTTAAGCAGCGGATTCGGGTTTCCGTCCATGGGGCTGAACCCTGCCTTGCTGGGCGCGCTGGGTCACATGACTCCCCCCGCTCTTGGGAGCAGGTCGCACCTCCTGCAGCAAGCCGGTCAGGCTCTGGGTGACCTACATGCCATGTTCCCCACTGACCCGCTCGGACTCGGCGTGTCCAGCAGCACTCTTTCCTCAACCTGCTCGACCAACACCACATCCTCCAGCCACGCTGGAATGCTGGCCCCTTCTTCATCCTCGGTGCCCTCTTCGTCATCGTCCTCCACTTCCTCCTCGCTCCCACCCTTCCTCATGAACCCCGGCATGGCAAGCATGCTCTCCGGCTTCTCGGTACCATTTTCCCAGCCTCTATTCCCTGGGTCCCTACACCCAAGAGGCCTGTCCTCTACCCCAACCCCTGCCTCCACTGCCTCTAatttcctctcttcctccagcCTGCTGGGGGCAGCGTTCAGCCGCCCCGACATGCACCCCTCACTCGCGGAAAACGGCGGGAGCAGTTCGGACGACGATGTCATAGAGGTGATGGGCCAGTGATTGGCTGCCTTGGATTCCGTTGTTCCAAATGGAAGCATCCTATTGGACGGAGCTGAAATTCTATAAATCCAAATGCTGAATATGCATGGAGTTAAGAAAGccgattatatatttttctttaccGCAAGGGACCAGAGCACAGGGCTACCGTGAAGAGCCCTAGGCGCATCTCTCTCACGAGGACCTGGACACGGACCTGATGAATTCCCTCAGAGAGAATAGCCGAACTGAACCGAACTTAAATGTGATTGTCTTTACAGACTGTTTGCATTCGTAAGAGACGACTTTAGAGATACTTAGCTGTTTGCTAGACCTTGTAGCATCACCCGGAATGATAAACGAAAAAACATATgtgacctttttttattataattgtaagtACTACTATTACTTTTGTAAACGGTGGTCCTACATGAATATTCATATTCGTTTCCAATCGCAGACTGGGCAACGGGGAAGGGGGAGGATTCGTAATAATCGAATCGCAGAACGACAGAAGCCATGCCTAGCGTTAGCACCGCCGAGACCTTTTTGCTTtccttttgagaaaaaaagcgACAAGGAAAACCTTAAAAACTCGAATGTATTTTCATGTTAGCCTTTAAAATTTGGTGGAGGGACGTAAGTTTAGTGCGTTTAGTTCGATATTAGCCTTAAAGCAGACAAACGGATCTGTGTTCTCGTTCAATTGCGTAGCAAACAAAATCATCCGTTGTTCTCCATCGGGATCATCTCACGAATGTGTAGACTGTTATGCGACCCTACTAGCCGTCGTTTCTTCAAAACCTGCGCTTCTGATCATCTGCGCGCTCATTCAGTTTCGTCCGTGTTGGGGCCACAGTCATGACCAAAGTGTTCGTCGGGCCGTTTCGAAAAAATCTTGATGTGTTAAACGTTTGTGTTAATGTTGACTCGCGCTGGTTGACCTGTGACTGACAAATCCCTCAGCCAATAACACTGTTCATTCTCTGTGCCTATTAGAGAGCTCTTTATTTTGACTCCTCCCACAGTCTGCTTTCCGGTCGGCAGACGCCCACATTGTGAACTCCGGCCTGAGTCTGCAGACGctgttatataaatacaacGGTGTGCATTTTA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K10876 RAD54L2; RAD54-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221684 lncRNA upstream 9283 5758011 ~ 5763162 (+) True G149811
TU221682 lncRNA upstream 18632 5753494 ~ 5753813 (+) False G149810
TU221683 lncRNA upstream 18727 5753179 ~ 5753718 (+) True G149810
TU221681 lncRNA upstream 19949 5752232 ~ 5752496 (+) True G149809
TU221672 lncRNA upstream 26129 5739572 ~ 5746316 (+) True G149806
TU221714 lncRNA downstream 33594 5822984 ~ 5824102 (+) False hyal2b
TU221723 lncRNA downstream 57778 5847168 ~ 5848586 (+) True lsm7
TU221724 lncRNA downstream 59602 5848992 ~ 5849918 (+) True G149829
TU221732 lncRNA downstream 93574 5882964 ~ 5885190 (+) True G149834
TU221752 lncRNA downstream 115443 5904833 ~ 5913295 (+) True G149846
XM_043222598.1 mRNA upstream 27394 5734461 ~ 5745051 (+) True LOC122327321
XM_043222596.1 mRNA upstream 29325 5734409 ~ 5743120 (+) False LOC122327321
XM_043222597.1 mRNA upstream 29325 5734416 ~ 5743120 (+) False LOC122327321
XM_043222845.1 mRNA upstream 47237 5673011 ~ 5725208 (+) True LOC122327460
XM_043222992.1 mRNA upstream 117066 5654029 ~ 5655379 (+) True wu:fb55g09
XM_043222741.1 mRNA downstream 5531 5794921 ~ 5802962 (+) True rassf1
XM_043222742.1 mRNA downstream 10246 5799636 ~ 5802962 (+) False rassf1
XM_043223022.1 mRNA downstream 14336 5803726 ~ 5806608 (+) False tusc2b
XM_043223021.1 mRNA downstream 14369 5803759 ~ 5806608 (+) True tusc2b
XM_043222671.1 mRNA downstream 21088 5810478 ~ 5823918 (+) True hyal2b
XR_006247632.1 other upstream 29807 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 317018 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 668009 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 1056493 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1534376 4237454 ~ 4238069 (+) False LOC122327447
TU221709 other downstream 14386 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 57778 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 402257 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 448897 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 713524 6502914 ~ 6507672 (+) False ccnt2b

Expression Profile