RNA id: CI01000030_07968740_07975571.mRNA


Basic Information

Item Value
RNA id CI01000030_07968740_07975571.mRNA
length 2797
RNA type mRNA
GC content 0.43
exon number 9
gene id CI01000030_07968740_07975571
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7968676 ~ 7975721 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCAAATATGATCCATCCAAACACTGCCACAACATCAAGAGACTGGAGACTGCAGACAACATCATGTCAGTATCTAAGCTGACATGGGAGATGGAAGGTGGAGATGATGAAATCAGTAAGAAAAGGAGAGGAGAGTTTCCACAGCATAAGCCGTGTCCCAAAAGATCTAAAGTAGACTTGAGTTCATTTCTCAGCAATTTGGCTCAGAGCAATAGTATTAATGCAGCTGACATTGGAAACAAGAACAAAATGGTGTTCCAACAAAACGGACTCCCTGCTACAAAGACAGAAAAACAAATACCTGTTGTTAAAAAATCAGTTTGTGTTTTGGACAATGATGCTGACTCTGAAGATGAAATCAGGATGTTGGTTGCTCAAGAACTTTCGACGAACACAAAACAAACCTCTGCAGAGGACGAGGACGACAACCTGGAGGTAGTGGGAGATGATTTTGTCGTTAAATCTAATGCTTTCTGGGGTGGAGCGGAACAAGATGGCGTAAAATCGCTACTAACTTCTTCAAAAGAGGATGAGGATTACGATTCTGCAGACACGGATGAAATACTCACCCAGAGAAAGACCCAAAAAACACAAGTTAGCCAAGATTCCCCGACAAAATCCAGTAAAAATGAGTCTTCATCTGAATCTGACAGTGGTAGCAATGATTCTGATTATGAAGCCATGATGGGGAACTGCACCCGCTTAGATCTCTCCCTGGCAGACTTGGAGCAGCTAGCTAAAAACGCAGAGGTGATTTCAGATGATGAAAGTGTGGAAGAACCCAAAATAGAACTCAAGACCCCAAGAGCGGCATGCAAAAGAAGAGGTAACAACCCTGAAGATATTTTAGCTTCGCTTCTTGGAGATGACACCCCTGACAAAGAACGTAAGAATCGGGTGACCACAGTATCCCTTCCAGCTTTCATTGGAACAAGGGATCTCTTTGAAGGTCCAGAGCCCATCCTGAAAAGAGTCACCCAGAGTATTGACAGTGAATCTCCTAAAAGACTCAAACAAGACCTGAATGTGAAAGAACGAAGCATCTCAGAAGATACAAGTCAACCGCAGTCTTCAAACCGTCCATCTCAACAGAAGCTGTCCAGTTTAAAGGAACAATCAACCTCAAAGAAACTTGAGAACCAATCATCAGAAAATGATTCTTCTAGTGATGAGTCAGAAAGCAGCGAAGCAGGCGAAAGTGCTCAAGTCGTCACCTTTAAAAAATCTTCAGCAACACAACCAGTAAGAACCAACCCTAAAACCGAACTGAAGACTGTTAGCTCTAACAATGCAAACACCTCAATCAAACCCAAGCAGACGAAGATCTCCAGATCCTCCAGTAGTGACTCAGAAAGCAGCGAGGAGGAAGATAATGAAGATACGACACAATTGACGAGAACCAACACTGAAACCAAACTGAAGACTGTTAGCTCTAACAATGCAAACACCCCAATCAAACCCAAGCAGACGAAGATCTCCAGATCCTCCAGTAGTGACTCTTCTAGTGAGGAATCAGAGACTAGTGATGATGAGAAGTCCAGACCTCAGCCAAAAGATTCCAAACCTGCCGATTCAAAGAAAGTTCAGGAGAAAGTTGACTCGCATCCGACAGTTTTTCACTCAACTGCCATAGATGCTCAGAAACAACAGAAGGACAACCAGAAACGTCTTGCGGCGCTGGAGCAACGTCAGAAAGAGACAGAACAGCAGAAGAAACTCATTCAGGGGGCTCTTTCTAGCGTGTTGTTCTTCATGTTCTTTGTGTTTATTTCCATTATAATTCTACAGGAGAACAAAAAGTCAGATGGCAACAAGCTGTTTGACAGTGAAGATGAGGATGATGGCGCTGAGGATGATCGTTTCCAGATAAAACCCCAGTTTGAGGGCAAAGCTGGACAGAAGCTTATGCAGCTGCAGGCTAGATTTGGAACTGATTCGAGATTTCAGATCGATTCGAGATTTCTGGAAAGTGATGATGAGACTGAAGATCAAGATGCAGCAGCTCCAGAAAAAGATGAAGAACAACTTCTTGAAGAGAAAAAGAAAAGTCTAGACATCCTCCAGAGCATTTTAAAAACCAGCATACAACCCCAGAACACCAAAAAGAGCAAGATGTTCAAAGATGTTTCGGGCCTGCATTACGACCCAACACAAGAGGAACATGCCGCTTTTGAGTCCAAGACAGAGATGCCGAAGAAAGAAAGTAAGGCGGCGAGACGAAAGAAACGTGAGGAGGCTGAAAAACTCCCTGAAGTGTCTAAGGACATTTACTTTGAGGTGTCGGCAGATTTGAAGGAGGTCTTTGGGACATCCAAAGAAAACCAGGACGAGGAGGAGCCGAAGGTTTCATGGGACAAAGAGGCAGAAGAGACTGAAGATATAATGACACCCATGGAAGTTTCCTTCACTTCTAATGTAGAAGCCCATGAAGACACATCGGGCGGATTCAAGTTCTCCTTCTTTGGCGAGGTTGCTTCTGCGGAGACGACCACCAAGACAGAGGGGCCGAGAATGTTCTGTAGAAGCGGAAAACTAGGAGACCAGAGGGAAGCCTGGGAAGAGAAGAGGACGTCACTCAGAGATGAGTGTCGCAAGAAACACAAAGATGCCAAAAGACGTCAGAGGCCGTCGCTAAAGAAGACCTGAACAATTTAAAGTAAACAAAGACATTTCTTACAGAAAAAATAACATTGTTGCACCCATTCATATTCTGTTTAATAGCTGTAATTTATTCTTCAAAACAACAGTATCTAATGCATATTCCCTTTTGTATGATTGAAACATGTTTTTGAGTGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183869 lncRNA upstream 95488 7859914 ~ 7873188 (+) True G161954
TU183871 lncRNA upstream 106988 7861182 ~ 7861688 (+) True G161956
TU183868 lncRNA upstream 110413 7855627 ~ 7858263 (+) True G161953
TU183865 lncRNA upstream 121919 7846196 ~ 7846757 (+) True G161950
TU183864 lncRNA upstream 122935 7845492 ~ 7845741 (+) True G161949
TU183893 lncRNA downstream 10835 7986556 ~ 7988149 (+) False G161974
TU183896 lncRNA downstream 10835 7986556 ~ 7988149 (+) False G161974
TU183897 lncRNA downstream 10835 7986556 ~ 7988149 (+) True G161974
TU183956 lncRNA downstream 12859 7988580 ~ 7989175 (+) True G162015
TU183904 lncRNA downstream 56629 8032350 ~ 8111022 (+) True G161977
CI01000030_07967106_07968408.mRNA mRNA upstream 92 7967106 ~ 7968584 (+) True CI01000030_07967106_07968408
CI01000030_07954583_07955459.mRNA mRNA upstream 12202 7954583 ~ 7956474 (+) True CI01000030_07954583_07955459
CI01000030_07924704_07945878.mRNA mRNA upstream 22737 7924704 ~ 7945939 (+) True CI01000030_07924704_07945878
CI01000030_07903607_07912664.mRNA mRNA upstream 55367 7903607 ~ 7913309 (+) True CI01000030_07903607_07912664
CI01000030_07899071_07899829.mRNA mRNA upstream 68356 7899071 ~ 7900320 (+) True CI01000030_07899071_07899829
CI01000030_07990330_08009606.mRNA mRNA downstream 14609 7990330 ~ 8010155 (+) True CI01000030_07990330_08009606
CI01000030_08047726_08057237.mRNA mRNA downstream 72005 8047726 ~ 8057237 (+) True CI01000030_08047726_08057237
CI01000030_08133065_08140755.mRNA mRNA downstream 157344 8133065 ~ 8140998 (+) True CI01000030_08133065_08140755
CI01000030_08150901_08154024.mRNA mRNA downstream 175180 8150901 ~ 8154024 (+) True CI01000030_08150901_08154024
CI01000030_08155452_08158318.mRNA mRNA downstream 179731 8155452 ~ 8158709 (+) False CI01000030_08155452_08158318
TU183810 other upstream 95904 7854085 ~ 7859348 (+) True G161901
TU183621 other upstream 766191 7199935 ~ 7200017 (+) True G161721
TU181432 other upstream 3451569 4516778 ~ 4517107 (+) False G159816
TU181300 other upstream 3480150 4431800 ~ 4488526 (+) True G159685
TU180187 other upstream 4924903 3013456 ~ 3013518 (+) True G158703
TU184054 other downstream 262244 8237965 ~ 8239604 (+) True G162088
TU183922 other downstream 568861 8544582 ~ 8548325 (+) True G161986
TU184111 other downstream 592289 8568010 ~ 8571726 (+) True G162137
TU184486 other downstream 1380682 9356403 ~ 9357014 (+) False G162449
TU184485 other downstream 1380838 9356559 ~ 9357014 (+) False G162449

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041178 True 4255 mRNA 0.42 16 NC_007133.7 10424995 ~ 10440688 (-)
tiger barb (Puntius tetrazona) TU221649 True 1980 lncRNA 0.42 4 NC_056720.1 5668465 ~ 5671375 (+)