Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU183897 |
| length | 1568 |
| lncRNA type | antisense_over |
| GC content | 0.45 |
| exon number | 2 |
| gene id | G161974 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 7986556 ~ 7988149 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU183869 | lncRNA | upstream | 113368 | 7859914 ~ 7873188 (+) | True | G161954 |
| TU183871 | lncRNA | upstream | 124868 | 7861182 ~ 7861688 (+) | True | G161956 |
| TU183868 | lncRNA | upstream | 128293 | 7855627 ~ 7858263 (+) | True | G161953 |
| TU183865 | lncRNA | upstream | 139799 | 7846196 ~ 7846757 (+) | True | G161950 |
| TU183864 | lncRNA | upstream | 140815 | 7845492 ~ 7845741 (+) | True | G161949 |
| TU183956 | lncRNA | downstream | 431 | 7988580 ~ 7989175 (+) | True | G162015 |
| TU183904 | lncRNA | downstream | 44201 | 8032350 ~ 8111022 (+) | True | G161977 |
| TU184032 | lncRNA | downstream | 168687 | 8156836 ~ 8158695 (+) | True | CI01000030_08155452_08158318 |
| TU184031 | lncRNA | downstream | 181207 | 8169356 ~ 8169574 (+) | False | CI01000030_08168074_08174577 |
| TU184030 | lncRNA | downstream | 186250 | 8174399 ~ 8174610 (+) | True | CI01000030_08168074_08174577 |
| CI01000030_07968740_07975571.mRNA | mRNA | upstream | 10835 | 7968676 ~ 7975721 (+) | True | CI01000030_07968740_07975571 |
| CI01000030_07967106_07968408.mRNA | mRNA | upstream | 17972 | 7967106 ~ 7968584 (+) | True | CI01000030_07967106_07968408 |
| CI01000030_07954583_07955459.mRNA | mRNA | upstream | 30082 | 7954583 ~ 7956474 (+) | True | CI01000030_07954583_07955459 |
| CI01000030_07924704_07945878.mRNA | mRNA | upstream | 40617 | 7924704 ~ 7945939 (+) | True | CI01000030_07924704_07945878 |
| CI01000030_07903607_07912664.mRNA | mRNA | upstream | 73247 | 7903607 ~ 7913309 (+) | True | CI01000030_07903607_07912664 |
| CI01000030_07990330_08009606.mRNA | mRNA | downstream | 2181 | 7990330 ~ 8010155 (+) | True | CI01000030_07990330_08009606 |
| CI01000030_08047726_08057237.mRNA | mRNA | downstream | 59577 | 8047726 ~ 8057237 (+) | True | CI01000030_08047726_08057237 |
| CI01000030_08133065_08140755.mRNA | mRNA | downstream | 144916 | 8133065 ~ 8140998 (+) | True | CI01000030_08133065_08140755 |
| CI01000030_08150901_08154024.mRNA | mRNA | downstream | 162752 | 8150901 ~ 8154024 (+) | True | CI01000030_08150901_08154024 |
| CI01000030_08155452_08158318.mRNA | mRNA | downstream | 167303 | 8155452 ~ 8158709 (+) | False | CI01000030_08155452_08158318 |
| TU183810 | other | upstream | 113784 | 7854085 ~ 7859348 (+) | True | G161901 |
| TU183621 | other | upstream | 784071 | 7199935 ~ 7200017 (+) | True | G161721 |
| TU181432 | other | upstream | 3469449 | 4516778 ~ 4517107 (+) | False | G159816 |
| TU181300 | other | upstream | 3498030 | 4431800 ~ 4488526 (+) | True | G159685 |
| TU180187 | other | upstream | 4942783 | 3013456 ~ 3013518 (+) | True | G158703 |
| TU184054 | other | downstream | 249816 | 8237965 ~ 8239604 (+) | True | G162088 |
| TU183922 | other | downstream | 556433 | 8544582 ~ 8548325 (+) | True | G161986 |
| TU184111 | other | downstream | 579861 | 8568010 ~ 8571726 (+) | True | G162137 |
| TU184486 | other | downstream | 1368254 | 9356403 ~ 9357014 (+) | False | G162449 |
| TU184485 | other | downstream | 1368410 | 9356559 ~ 9357014 (+) | False | G162449 |
