RNA id: TU183869


Basic Information

Item Value
RNA id TU183869
length 259
lncRNA type sense_over
GC content 0.32
exon number 2
gene id G161954
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7859914 ~ 7873188 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACATCAGAATGTATGTTAAAAGATACAGCACAACTTACCGAAATCTGTATCATGTCTCATGTTATCGCTCAATCAGTGTTTCAACCACAGAAAGCCATCAATAAAACAGCTTGTAAACAGCTTATGTCACGTGATGTTATATTTACTTCAGAAAAGCCATTTAGTGACCTAAACTCATTAGTCAGGTAAAAAATGAACTCTAGAGAGGAGCATTTTGCTAAATATATGCACCATATTACATATTCATTATATGTATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183868 lncRNA upstream 1651 7855627 ~ 7858263 (+) True G161953
TU183865 lncRNA upstream 13157 7846196 ~ 7846757 (+) True G161950
TU183864 lncRNA upstream 14173 7845492 ~ 7845741 (+) True G161949
TU183851 lncRNA upstream 55374 7804286 ~ 7804540 (+) True G161937
TU183850 lncRNA upstream 55808 7803825 ~ 7804106 (+) True G161936
TU183893 lncRNA downstream 113368 7986556 ~ 7988149 (+) False G161974
TU183896 lncRNA downstream 113368 7986556 ~ 7988149 (+) False G161974
TU183897 lncRNA downstream 113368 7986556 ~ 7988149 (+) True G161974
TU183956 lncRNA downstream 115392 7988580 ~ 7989175 (+) True G162015
TU183904 lncRNA downstream 159162 8032350 ~ 8111022 (+) True G161977
CI01000030_07842295_07842928.mRNA mRNA upstream 16986 7842036 ~ 7842928 (+) True CI01000030_07842295_07842928
CI01000030_07829863_07839971.mRNA mRNA upstream 19040 7829863 ~ 7840874 (+) True CI01000030_07829863_07839971
CI01000030_07804997_07807303.mRNA mRNA upstream 51998 7804662 ~ 7807916 (+) True CI01000030_07804997_07807303
CI01000030_07759509_07760589.mRNA mRNA upstream 99032 7758805 ~ 7760882 (+) True CI01000030_07759509_07760589
CI01000030_07738356_07746377.mRNA mRNA upstream 113468 7738356 ~ 7746446 (+) True CI01000030_07738356_07746377
CI01000030_07899071_07899829.mRNA mRNA downstream 25883 7899071 ~ 7900320 (+) True CI01000030_07899071_07899829
CI01000030_07903607_07912664.mRNA mRNA downstream 30419 7903607 ~ 7913309 (+) True CI01000030_07903607_07912664
CI01000030_07924704_07945878.mRNA mRNA downstream 51516 7924704 ~ 7945939 (+) True CI01000030_07924704_07945878
CI01000030_07954583_07955459.mRNA mRNA downstream 81395 7954583 ~ 7956474 (+) True CI01000030_07954583_07955459
CI01000030_07967106_07968408.mRNA mRNA downstream 93918 7967106 ~ 7968584 (+) True CI01000030_07967106_07968408
TU183621 other upstream 657429 7199935 ~ 7200017 (+) True G161721
TU181432 other upstream 3342807 4516778 ~ 4517107 (+) False G159816
TU181300 other upstream 3371388 4431800 ~ 4488526 (+) True G159685
TU180187 other upstream 4816141 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 5245621 2595876 ~ 2614293 (+) True G158416
TU184054 other downstream 364777 8237965 ~ 8239604 (+) True G162088
TU183922 other downstream 671394 8544582 ~ 8548325 (+) True G161986
TU184111 other downstream 694822 8568010 ~ 8571726 (+) True G162137
TU184486 other downstream 1483215 9356403 ~ 9357014 (+) False G162449
TU184485 other downstream 1483371 9356559 ~ 9357014 (+) False G162449

Expression Profile