CI01000030_07738356_07746377 (SASS6)


Basic Information

Item Value
gene id CI01000030_07738356_07746377
gene name SASS6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7738356 ~ 7746446 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_07738356_07746377.mRNA
ATGACGGAATTACTTTTTAACAAGAGGTTACAAGTACAGGTGAAGAATAGAGAGACCGATGAGAGACGTTCAGTCATTCGCATCAGTATTGAATTGCAGCTATCATCAAATCCTGTCCATAGGAAGGATTTGGTTGTACGGCTGACAGATGATACTGATCTTTACTTTTTATACAATCTTGTCATATCAGAGGAGGATTTTCAGAGCTTAAAAGTACAACAAGGGCTTTTAATAGACTTCACATCATTCCCACAGAAATTTATTGACTTGCTTGAGCAGTGCATCTCTGAACAGGACAGAGAAAGCCCACGGTTCCTGTTGCAGCTCACGTCAGCTTCATCAGCGTTCGACCACAGTCCTTCAAACCTTAATATTGTGGAGACAAACGCTTTTAAACACCTCACACATCTCTCTCTGAAACTGCTCCCGGGATCTGATACAGATATTAAGAAGTATCTGGCCACCTGTCTGTCTACTATAAAGGAGGAAAAGCAGCAGTTGGAACAGAAGTTGAGAAAGACTGAAGAAGATCTGACAAGACAGCTAAATTATGCACAGCAAACCCTGTCTGAGAAAAGTCGAGAGTTGGACAAACTCAGGTCTGAATGGACATCCCAAACAACATCTCTGTCCAGCAGACACATGCAGGATCTCACAGCTGAGCGTGAAAAAGCTCTGGAGACACAATCGCGTCTGCAGCAACAGAACGAACAGCTGCGACAGGAACTTGAATCGTCTCATCACAGAAGCACCCAGCAGCTCCAAACCAAAGTCTCTGAGCTGGAAACGGCCAACAGGGAGCTCATCGACAAGAAATACAAGAGCGACTCCACCATTCGAGACCTTAAAGCCAAACTGGCCAGTCTGGAAGAGGAGTGTCAGAGGTCAAAGCAGCAGGTTCTGTCACTGAGGAGAGAGAACAGCAGCCTCGACACCGAATGCCACGAGAAAGAGCGTCTCGTCAACCAGCTGCAGACGCGAGTGGCCGTCTTAGAGCAGGAGATCAAAGATAAAGACCAGCTCGTGCTGCGGACCAAAGAGGTGCTGGAAGCCACCCAGCAGCAGAAGGCGAACGGCATCATCAAGAAGCTCCAGGGGGATCTGAAGGCTCTGGTGGGGAAGATCAAGGTGAAGAACACCGTGACTGTGTCTCAAGAAAAGATCCTGCAGGAAACTACAGAGAAACTCCAGCGGGAGCAGCGAGAACTGCAGGACACCCAACAACGGCTCCGACAGAAAGAGGAAGAGGCAACAAAATTAAAGGAGCAATTAGAAGCCACAATTCAGAAATTGGACGAGAGCAGGGAAGTGTTAAAAACCAATGAGAACGTGGAGAATCTGTTGGCCTGGACTCCAAGTACTTTGAGAGACGAGACGACAGCATTCCTCTACGTGGTCTCCTACCCAGCATGCATCTAAATAGAGGCAAACGACAAAAACATTTTTTACCCAGTTATTCCTAATTGCAATACTTTTAATGGACATTTA

Function

symbol description
sass6 Acts upstream of or within several processes, including embryonic cleavage; microtubule cytoskeleton organization; and spermatogenesis. Located in centrosome. Is expressed in blastomere and unfertilized egg. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 14. Orthologous to human SASS6 (SAS-6 centriolar assembly protein).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16487 SAS-6, SASS6; spindle assembly abnormal protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_07738356_07746377.mRNA True 1488 mRNA 0.47 12 7738356 7746446

Neighbor

gene id symbol gene type direction distance location
CI01000030_07722943_07724722 TIMM13.L, TIMM13, TIMM13.S coding upstream 13358 7722694 ~ 7725017 (+)
CI01000030_07673227_07694020 ARHGEF18, ARHGEF18B coding upstream 44336 7673227 ~ 7694020 (+)
CI01000030_07601044_07646747 INSR, INSRB, INSRA coding upstream 90491 7601044 ~ 7647865 (+)
CI01000030_07554965_07558766 USE1 coding upstream 178714 7554730 ~ 7559642 (+)
CI01000030_07521446_07540249 INSR coding upstream 197880 7521381 ~ 7540476 (+)
CI01000030_07759509_07760589 NA coding downstream 12359 7758805 ~ 7760882 (+)
CI01000030_07804997_07807303 NA coding downstream 58216 7804662 ~ 7807916 (+)
CI01000030_07829863_07839971 BAP1 coding downstream 83417 7829863 ~ 7840874 (+)
CI01000030_07842295_07842928 NA coding downstream 95590 7842036 ~ 7842928 (+)
CI01000030_07868597_07886123 NA coding downstream 121846 7868292 ~ 7886228 (+)
G161895 NA non-coding upstream 6257 7731819 ~ 7732099 (+)
G161894 NA non-coding upstream 6855 7731116 ~ 7731501 (+)
G161892 NA non-coding upstream 17562 7720595 ~ 7720794 (+)
G161804 NA non-coding upstream 23954 7712703 ~ 7714402 (+)
G161924 NA non-coding downstream 36851 7783297 ~ 7783554 (+)
G161926 NA non-coding downstream 38558 7785004 ~ 7785207 (+)
G161928 NA non-coding downstream 41432 7787878 ~ 7788079 (+)
G161929 NA non-coding downstream 41662 7788108 ~ 7788365 (+)
G161930 NA non-coding downstream 51304 7797750 ~ 7798459 (+)
CI01000030_07200104_07202258 GCGA other upstream 535871 7200104 ~ 7202485 (+)
G159816 NA other upstream 3221249 4516778 ~ 4517381 (+)
G159685 NA other upstream 3249830 4431800 ~ 4488526 (+)
CI01000030_03018776_03042194 FGF22 other upstream 4694583 3018776 ~ 3043773 (+)
G158416 NA other upstream 5124063 2595876 ~ 2614293 (+)
G162088 NA other downstream 491519 8237965 ~ 8239604 (+)
G161986 NA other downstream 798136 8544582 ~ 8548325 (+)
G162137 NA other downstream 821564 8568010 ~ 8571726 (+)
G162449 NA other downstream 1609957 9356403 ~ 9357014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020939 sass6 coding NC_007133.7 CM002906.2 10735909 ~ 10752471 (-)