CI01000030_07899071_07899829


Basic Information

Item Value
gene id CI01000030_07899071_07899829
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7899071 ~ 7900320 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_07899071_07899829.mRNA
CTCATGCAAAAACTTCATGATGAAAACTGAGGTCTCTACTGCTGCTAACTTTGTCACACGTCTGTTGAGGGGAACGGGACTGCTTTCAGAAGAACAGCTGCAACAATTCAGATTCTCTTTGGAAGAAGCTTTAGGGGATCATTATCGGCACCATTGGTTCCCAAACGCACCTTGCCGAGGTTCGGGTTACAGGTGCATCCGGATCAACCACAAGATGGACCCTCTGATAGGCAAAGCAGCCTGTACGATTGGACTCACAAAAGAGCGACTCTTTTCACTGCTACCTAGTGAACTCACCATGTGGGTCGACCCATATGAAGTGTCCTACCGGATTGGAGAGGATGGGTCCATATGCGTCCTCTATGAGTCCACACCTCCGTCTGACACAAATCAGACGGACAGCTGCAAAGACGAACTGAGAATCGGACAGCCGAGTCCGTCCAAATCCTTCGGCATGATGACTTGCTCCAGCTGAAGAATGATGCTGTCTAATGAGCTGCTTTGAGTAAATCAGACATTGCTCACATTTGATTTCTTTTTAAATCTTGTTGTTTTTTTTAGACAGATTTTTTTTTTAAATCAATGGTGAAATCTTCATCCTATTGACCTCATGGTGAAAACAGATGTATTTTGATTAAATGTAAGTTTTAAGCTCCCTGTACAGTCATGTTTAATATGTTTTTTTTTTAAATTTCTATTAAAAGGTTTTCTATGAATTTCTATAAAAATGTCTTTTGTGTTTATTCCATGTAACTATACATAAAGCAATAATTTCTTCTAATCATATTTAATGCTTAATGTTTGTTTCTCGATAAAATAAGCACTTTATAGTTATGCAAAGCTACAAATTTTGCATCTGTCTTAAAAACAATGATTTATTCTTCCTAAACTTACATTTGTTTATTTGGAATTTGCCTAATAGGAAGTATAAAATTAAACAACTGATATTCATTACATTTAAATATA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K14443 TOB; protein Tob/BTG

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_07899071_07899829.mRNA True 966 mRNA 0.37 2 7899071 7900320

Neighbor

gene id symbol gene type direction distance location
CI01000030_07868597_07886123 NA coding upstream 12843 7868292 ~ 7886228 (+)
CI01000030_07842295_07842928 NA coding upstream 56143 7842036 ~ 7842928 (+)
CI01000030_07829863_07839971 BAP1 coding upstream 58197 7829863 ~ 7840874 (+)
CI01000030_07804997_07807303 NA coding upstream 91155 7804662 ~ 7807916 (+)
CI01000030_07759509_07760589 NA coding upstream 138189 7758805 ~ 7760882 (+)
CI01000030_07903607_07912664 IPPK coding downstream 3287 7903607 ~ 7913309 (+)
CI01000030_07924704_07945878 ECM2, OMD coding downstream 24384 7924704 ~ 7945939 (+)
CI01000030_07954583_07955459 NA coding downstream 54263 7954583 ~ 7956474 (+)
CI01000030_07967106_07968408 NOL8 coding downstream 66786 7967106 ~ 7968584 (+)
CI01000030_07968740_07975571 NOL8 coding downstream 68356 7968676 ~ 7975721 (+)
G161954 NA non-coding upstream 25883 7859914 ~ 7873188 (+)
G161956 NA non-coding upstream 37383 7861182 ~ 7861688 (+)
G161953 NA non-coding upstream 40808 7855627 ~ 7858263 (+)
G161950 NA non-coding upstream 52314 7846196 ~ 7846757 (+)
G161949 NA non-coding upstream 53330 7845492 ~ 7845741 (+)
G161974 NA non-coding downstream 86236 7986556 ~ 7988149 (+)
G162015 NA non-coding downstream 88260 7988580 ~ 7989175 (+)
G161977 NA non-coding downstream 132030 8032350 ~ 8111022 (+)
CI01000030_08155452_08158318 RDH5 non-coding downstream 256516 8155452 ~ 8158709 (+)
CI01000030_08168074_08174577 NA non-coding downstream 269036 8167927 ~ 8174662 (+)
CI01000030_07200104_07202258 GCGA other upstream 696586 7200104 ~ 7202485 (+)
G159816 NA other upstream 3381964 4516778 ~ 4517381 (+)
G159685 NA other upstream 3410545 4431800 ~ 4488526 (+)
CI01000030_03018776_03042194 FGF22 other upstream 4855298 3018776 ~ 3043773 (+)
G162088 NA other downstream 337645 8237965 ~ 8239604 (+)
G161986 NA other downstream 644262 8544582 ~ 8548325 (+)
G162137 NA other downstream 667690 8568010 ~ 8571726 (+)
G162449 NA other downstream 1456083 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 2142473 10039358 ~ 10047210 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G18945 LOC105893506,LOC108431510,LOC106566656,LOC107586924,LOC107593103,LOC107704447 non-coding CM030122.1 CM030122.1 49707666 ~ 49709260 (-)