RNA id: CI01000030_07990330_08009606.mRNA


Basic Information

Item Value
RNA id CI01000030_07990330_08009606.mRNA
length 4665
RNA type mRNA
GC content 0.48
exon number 20
gene id CI01000030_07990330_08009606
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7990330 ~ 8010155 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGACGCGCCGCATCTGTCAGAGCAGAGTCCGGAGAAACGCGTCCGCATCGTGGGATCCGAGCTGGTGGACAATTACACGGTTTACGTCATAGAGCTGAAGGTTGGAGATCACAGTTGGACGGTCAAACACCGTTACAGCGACTTTTACGATTTGCACGAAAAACTCACTGTGGAGAAGAAGATCGATAAACATCTGCTGCCGCCCAAAAAGATCATCGGCAAAAACTCCAAAAGCCTTGTTGAGAAGCGTCAAAAGGAGCTGGAAGTTTATCTCCAAACACTCCTGAGCAGATTCCCAGCAGCGACTCCCAAAGTCCTATCTAACTTTTTGCTTTTTCACTTATATGAAATCAATGGAATCGCTGCTGCCCTGGCTGAAGAGCTCTTTCATAAGGGTGAGCAATTGTTGGCTGCAGGTGAGGTGTTTCTGCTCAGACCGCTCCAGCTGTACGCCGTCACACAGCAGCTGAAACTCGCCAAGCCCACCTGTGCCAACGGAGATGCCAAAGCCGACCTCGGACACATCCTGGACTTCACCTGCCGCCTCAAGTACCTCAAGATCCCTGGAATGAAAACAGCGGTGGGGACGAGTAACATCGAGGAGCAGAGCCTTCCGTTTGACCTGTCCATCTTTAAATCACTGCTCCAGATTGAGATCAGTGATTGCGATGCTGGACAGATCAAAGGTCTGCCTTCCCTAAAGCCCACGCTGGCCACGCTCACCATACACCTCTCTGCTGGCAGTATGAAGGAAATCTTAGTTCCTGAAGGGTCTGAATTTGCACAGTGGGAACCTGAGGGTGTGGATACGGACTGTCCCGTGACGGCGATTATTCCCAAGTGGAAGATGCTCACCACTCTGGACATGAGCCGAAACTTCATACGCTGCATCGATGAGTCTGTGAAACTGATTCCTGAAGTTGAATTTCTTGATCTCAGCCATAATGAGTTGTCTGTAGTGGAAAACCTCCAGCATTTGTACAACCTGGTCCATCTGGATCTGTCCTTCAACAAACTCACCGTCCTGGAGTGCGTTCACACTAAACTTGGCAATATCAAGACTTTGAATCTGTCTGGGAATCAGCTGGAGACGCTCTCCGGCCTCAGTAAACTTTACTCCTTGGTTAACCTGGACTTAAGCAGCAACAAATTAGCACAGCTGGATGAAATTAAACACATCGGCACTCTTCCCTGTCTGGAGAAACTGACTCTGGCTCATAACCCCATGTGCATCATCCCAGATTACAGGACTAAAGTTCTGGCCCAGTTCTGCGACAGGGCCTCTGAGGTGAGTGACGTCCCAGGGCAGGCCGCCAGCGGGCAGCAGTCCTCTTCGTCCTCTCTCGTCGCGCCGCCCTCCTCTTCCTCCCCCTCTTTGTCCCGTTCCACCTGCTCCAGTCAAGAAATAACTACTTGTACAGAAAAAGCTTTTATTACCAAAGAGATATTAACTCATGTGGATTCTACAATTACCCAGAGATGCTATGATGTTTACAGCTCGGCCTGTGAGGTCAACCCGCAGGTGAAAACTCAAGTTGATTCCAGTTTATCTTTGGAGGTCACCTTTGAGAGCAGCTCCTGTTGCTGTGAAGAGGAGTGGAAACCTTGGACCACAAGTCTTTTGAATCTCTTTGTGCCTCCTACTTTACTGTCCTACACTACCACCAACCAGGAGTTTACCAACCAACTTTCTGCTCACATCAGCCAGGCTAACAGAGAAGAATCATCCCCGATACCTTGCAAAACCAATTCTCTGGAGGGCAAGGACCAAGGCAGCCCTCAATCGGGGGATGGGTACTTTGAGATGACTCTAGATGGCACCAACGAGATCATGGGTTGTTCCTCTTCATCTACAGTTCAGGAAAAGGGACCAGATGATGTGAAGAGAGAATCTGCAGATGATCATGTAAAAATCGTAGCTTGGTCTCTTTGCATCAGTGTTGGAGAAGTTTTGAGTCAGTGGCCATCTTGTTTGGTGGCAACTGACAGCTCGCTTGTGGTTTTCCACCCACGGTCAGAAGAGCCAGTGAGTAACTTGGAGGAACTAATGGAGAACCTTGAGATTGACTTGGTTGTGCTGTACACCAACATTGAGACCTTCCAGTTTGATATTCCAGAGGTTTGTGTCTCCTTGAAGGTGAAGTCAAGCAATACACGATGGTTCTTTTTCTCAGATGCCCAAAGTCTGAAGGAGATGCACTCTTGCATTAGCCCTCATGTGGACCAAACTAACGAACAAATTTTGAACTCTAACACTCAGATGTTCATCCGACAGTTTCTGAACTCTTGGGACTTTGAGGAAAGCGATGAAAGCGTAAAAGGTGGACACTTGGTCCATTTCCTTAATCTAGACCCATCTACCTCCGACAAGAACGTCATAAACAACCCACAATTTCCAAAGAACTCAGTACCCTCGGATGTTTTATCCCAAATCAGCCTGTTTGAAAGTGATCAGGACCAAACCTCCAATCCCATGATCCTCTTCCTTACCTCTCGGCACCTTTGCGTTCTCAAGGTAGACTTTGTCGCTCTGTCGTCCCGGGACTCTTCGGAAGCGAGTGTGATGCGGAGCTGCTCCAAAGTAACCCGTATCCCGCTCTCGTTCACACTCCTCGACCCAAAGCAGAAATGTTCTTGTAGAGCCGTCTCAAATTCTCGGCGTTTCTATGATGACCATGTCGTAGAACTGATGGCAGGTCACGAGCTCCTGTCTGTTGTTTTTGCCCTTCCACAAGACAAGTTTACCTTCCTGCAAGAGTTCATACGGCTTCGATCCAATCTGCGGGAAATTAAGACCATCGCCCTGCAGCACACCAAGAAAGGACACTTGAAAGTGCACAGTTGTCCCGCTCCGGCTACAACCACCAAAAGAATACCTACCAGCAGCGTCCCTCAGGAAGTGCCAAGGCCCCATCTGACCCTGTCTCTGCTGTATCCAGCCAAATCTCTCATTCAGCAGCTGATGGAGGACAACCAATGTCCCTCACACCTCTCACTTTCCTCATCATTACTCCTCATCTCATCTCTCAAAGGAGACCAGCTTGTGGAGAATGAGGAGCTGAAACACATCCTGTGGACATCGGTGCTCTTCTACAGATCTCCTGACGTAGAGACAACCGCCTGTGTCCTGCTGTCCACCAGAGCCATCTACTTCATCCTGGAGGACACGGCGTCCTCGCTCACCAACCAATCAATGATGTGGACCTGGCAACCATCCGAGCACAAGGACACCGATTTCCTCATCTCCTTCTGCTTCACCCTTAAACTGAAGGACCTGCAGAGCGTCAACGTGGGCTTGTTTGATCAGTACTTTCGAGTCGTCGGGCCCTCTGCTGATCACATCATTTCCTGTCTGACCCGTGACGGTTACGGCACACATCGCTTCCTGCAGCAGCTGATGCTGGTTTTGTCCTTGCTGGAGAAAGTTCCCTCTCCTGAACCTTCTGAGCTGGATTTCTACTCACAGTTTGGAAACAAAAGCACAGGTAAAATGGAGAACTACGAGCTGGTCCACTCCAGCAAGGTGAAGTTTGTATACCCAAGCGAGGAAGAAATCGGAGACCTCACCTTCATCGTGGCGGAGAGAAAGACCCCGCAGGCGCCGTCTCACTCCTTCAACATCCTTTTGTACGTACTGGTGTTCCAGGTCCACGTCGTTCCAGGCCAAACCAGCCAGAACCGGACCGTCCTACAACCCAAGACTCTTATACTCACCAGCACAGATGTCTTCCTCCTGGATGAAGACCACATCAGCTACCCGCTACCTGAATTCGCAAAAGAGCCGCCGCAAAGAGACAAATACCGTCTCACGGATGCCCGGCGGATTCGTGACCTGGACCGCGTGCTAATGGGCTACCAGACTTACCCGCAAGCCCTCACGCTGGTGTTCGACGACGTTCCCGGACCGGATCTTTTGTGCCACCTTACCATGGACCATTTTGCGGATGCCGACAGGAAGGGCGACAGGACACGGGGGGCTGGAGGAGCCGAGGGTGAAGTGCAGTGGTGTATTTTTGTACCGGGTGCGGACAGCAGGGAGCGGCTGATATCGCTCCTGGCTCGCCAGTGGGAGGCGCTATGTAGCCGAGAGCTGCCGGTAGAGCTAACAGGCTAAAGCACGGAAAAAAACCTAAAATGCACAGTATTTACCTACACATAGTATGACGAACATTTGTTTTTACTAACTTTTTTTTTTACTGTTTTGACACAATGCATCCTGGGAAGCTGTATTGTAGAGTCCACACGAGTATAATATTTTTTGTCTCAGGCTTCAAACTTTGCTTTGCTCTTCAAACATATTTATCTGCTGCTGTGTACAATCGGCCATGCATCATAAAATGTGAAACATTTGTTATACAGTTTTGTGCTACAGTGTTATTTTGATTTTTAAAGTAAATTTGTTGTTCCATGGCTACGAAATGATTTTGTGATAGATGGCTTTTAATGAACGAAAAAGATATATAAAGTCTTTCGTTTTTTTACATAAATGCAGTTTTAAAGTGTTATTCCTGTTTTAGAAAGTATTCCCGAGATGAATCTGTGGATTTATTTGTACAGATATTCAAACGGAAGACCACCGAGCACATGTTTACAGATCGCTTTCAGCTTCATGAGATTATTCATCATGGGAATTCAGACTCATCATGCACTTTGAATTTTTTAA

Function

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183956 lncRNA upstream 1155 7988580 ~ 7989175 (+) True G162015
TU183893 lncRNA upstream 2181 7986556 ~ 7988149 (+) False G161974
TU183896 lncRNA upstream 2181 7986556 ~ 7988149 (+) False G161974
TU183897 lncRNA upstream 2181 7986556 ~ 7988149 (+) True G161974
TU183869 lncRNA upstream 117142 7859914 ~ 7873188 (+) True G161954
TU183904 lncRNA downstream 22195 8032350 ~ 8111022 (+) True G161977
TU184032 lncRNA downstream 146681 8156836 ~ 8158695 (+) True CI01000030_08155452_08158318
TU184031 lncRNA downstream 159201 8169356 ~ 8169574 (+) False CI01000030_08168074_08174577
TU184030 lncRNA downstream 164244 8174399 ~ 8174610 (+) True CI01000030_08168074_08174577
TU184036 lncRNA downstream 177225 8187380 ~ 8187595 (+) True G162074
CI01000030_07968740_07975571.mRNA mRNA upstream 14609 7968676 ~ 7975721 (+) True CI01000030_07968740_07975571
CI01000030_07967106_07968408.mRNA mRNA upstream 21746 7967106 ~ 7968584 (+) True CI01000030_07967106_07968408
CI01000030_07954583_07955459.mRNA mRNA upstream 33856 7954583 ~ 7956474 (+) True CI01000030_07954583_07955459
CI01000030_07924704_07945878.mRNA mRNA upstream 44391 7924704 ~ 7945939 (+) True CI01000030_07924704_07945878
CI01000030_07903607_07912664.mRNA mRNA upstream 77021 7903607 ~ 7913309 (+) True CI01000030_07903607_07912664
CI01000030_08047726_08057237.mRNA mRNA downstream 37571 8047726 ~ 8057237 (+) True CI01000030_08047726_08057237
CI01000030_08133065_08140755.mRNA mRNA downstream 122910 8133065 ~ 8140998 (+) True CI01000030_08133065_08140755
CI01000030_08150901_08154024.mRNA mRNA downstream 140746 8150901 ~ 8154024 (+) True CI01000030_08150901_08154024
CI01000030_08155452_08158318.mRNA mRNA downstream 145297 8155452 ~ 8158709 (+) False CI01000030_08155452_08158318
CI01000030_08159242_08166884.mRNA mRNA downstream 149087 8159242 ~ 8166945 (+) True CI01000030_08159242_08166884
TU183810 other upstream 117558 7854085 ~ 7859348 (+) True G161901
TU183621 other upstream 787845 7199935 ~ 7200017 (+) True G161721
TU181432 other upstream 3473223 4516778 ~ 4517107 (+) False G159816
TU181300 other upstream 3501804 4431800 ~ 4488526 (+) True G159685
TU180187 other upstream 4946557 3013456 ~ 3013518 (+) True G158703
TU184054 other downstream 227810 8237965 ~ 8239604 (+) True G162088
TU183922 other downstream 534427 8544582 ~ 8548325 (+) True G161986
TU184111 other downstream 557855 8568010 ~ 8571726 (+) True G162137
TU184486 other downstream 1346248 9356403 ~ 9357014 (+) False G162449
TU184485 other downstream 1346404 9356559 ~ 9357014 (+) False G162449

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041177 True 4302 mRNA 0.48 20 NC_007133.7 10361730 ~ 10397600 (-)
bowfin (Amia calva) AMCG00017174 True 6451 mRNA 0.44 21 CM030122.1 49455494 ~ 49477304 (-)