RNA id: TU222443


Basic Information

Item Value
RNA id TU222443
length 1268
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G150300
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6363605 ~ 6365101 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATAGTGCAATTCCACGCCGTACAGCTCCAGCGTCCGCACAGCATTCAAGTAGTTAAACTCGGACTGAGCTGGTGTGAGTCCACTgcTTGTGCTCTTGGTGAAGTTTGGCGACCTCTTTCTCGAAGTCCTGCGGAGGGCTGGGAACGAAGCTGTACTCGGAGAGGTACCCGGGCAAATGTTCGGAGTGACTGTAGTCCCCCAGCTCAGCTGAAACGCAAAGCAGGCCAAGAAACCATGTGTGCTTGTACGTCAGCGCGAGACACTGTGCGCCCTTCACCCTTGATCTAAGTGAGCAGACTGACTCATTCGCTGCACTGGAAACTTCACAGAGATTCAAATCGCTAGCTCTCCCCCAAAAAAATCGAAGTAGatcatttatatgaaaatatatcgTGTTgttgcataaatgtaataaaatttaaaataattaacaaattaaaattaaaccatAAATTGGGTaaaaatttttgtaaattaaaattttgtaaaaattgcAAACtgaagcattacatttttacaattttctctgcaaaaaaaaagaacaaacaagtATATTTATCCTAACGTTGCATAATTCTGTACAACTTTACAGAAGCACCTTTAcctttagaaattaaatttaacagcgctattaaatcatttgtattgctatttagatatttttaagcgTGCACAACAAACCTGCCGATAATTCTAATTAAAGATGACAATCGACGCAAACTTATGCGTTTAGTTACGCCTTTCCATAATCATCAAATGCGAAGCTactactaaaacacacacacaccggctgTGGCGAGCGTAACATGACCGGTTACCACGACAGAttgttaattatgtaataaatctGCACTAGACGCATTTTTTTTCAGCGTTATTACTGGAAATGGGTCAGACGGGGACAGGAAAGAGACAAAAAGGCAGATCGTGGACTATTTGGCAAAGCGTAGAGCTTTAGTTCATCCGGTGCGGACGGTTATATCACcagccaaacaaacaaacacgcaggTCAGGGAGTCTGAAAATTCACTCGGACCGACGTGAAAACCATCACGGATGGCAAGAACGCACTTGGTATAATGCATGACGGCTTCAACGTTTAAAATAAAGAGCGCCCGATCAACAGAAAACCTCATTACGGGTTCCTCACGTTTATTTGGCACCGGAAAACCCACGGGGCCGCTAATCGTTAGAGCATAAATCAGCTGGAAAACTTACCCTGAACGGCGTAAGAAGCCAGAAGAACCGCGGTGTTTTGTGGGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222438 lncRNA upstream 9937 6352762 ~ 6353668 (+) True G150296
TU222436 lncRNA upstream 13935 6347418 ~ 6349670 (+) True G150294
TU221901 lncRNA upstream 43564 6319805 ~ 6320041 (+) True G149949
TU221900 lncRNA upstream 44264 6318985 ~ 6319341 (+) True G149948
TU221851 lncRNA upstream 139822 6223257 ~ 6223783 (+) True G149913
TU222574 lncRNA downstream 368185 6733286 ~ 6734808 (+) True G150378
TU222624 lncRNA downstream 463403 6828504 ~ 6831372 (+) True G150408
TU222617 lncRNA downstream 481785 6846886 ~ 6964118 (+) True G150403
TU222634 lncRNA downstream 501111 6866212 ~ 6866844 (+) True G150417
XR_006247598.1 lncRNA downstream 606739 6971840 ~ 6973715 (+) True LOC122327119
XM_043223946.1 mRNA upstream 16271 6344121 ~ 6347334 (+) True LOC122328229
XM_043222881.1 mRNA upstream 47309 6314884 ~ 6316296 (+) True LOC122327481
XM_043222885.1 mRNA upstream 51047 6310669 ~ 6312558 (+) False LOC122327484
XM_043223850.1 mRNA downstream 12591 6377692 ~ 6385265 (+) False mrasb
XM_043223851.1 mRNA downstream 12859 6377960 ~ 6385265 (+) True mrasb
XM_043222422.1 mRNA downstream 54557 6419658 ~ 6472721 (+) True mgat5
XM_043222463.1 mRNA downstream 137816 6502917 ~ 6510456 (+) True ccnt2b
XM_043222378.1 mRNA downstream 213906 6579007 ~ 6618908 (+) False LOC122327191
TU221839 other upstream 124248 6238287 ~ 6239357 (+) False npb
TU221826 other upstream 170946 6191647 ~ 6192659 (+) True G149895
TU221722 other upstream 515019 5847168 ~ 5848586 (+) False lsm7
TU221709 other upstream 556982 5803776 ~ 5806623 (+) False tusc2b
XR_006247632.1 other upstream 620967 5734408 ~ 5742638 (+) False LOC122327321
XR_006247622.1 other downstream 137813 6502914 ~ 6507672 (+) False ccnt2b
TU222560 other downstream 343387 6708488 ~ 6708891 (+) True G150369
TU223137 other downstream 1802348 8167449 ~ 8168272 (+) True G150756
TU223279 other downstream 2249188 8614289 ~ 8617605 (+) True G150862
TU223378 other downstream 2525542 8890643 ~ 8892081 (+) False pdzk1ip1

Expression Profile