RNA id: XM_043222605.1


Basic Information

Item Value
RNA id XM_043222605.1
length 2987
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC122327325
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3297362 ~ 3592373 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCACAGAGACCTGAACGCTTTCGACGTGGAATCTCTCTTATAGCGGAATTCCCTTCGAAGTTCACTTAGAAGTCTACTTACTGTCGAATGGAACGACTCTCCGCCATTAAAGTCGTTCAGATTTAGAAAGCGTAAACAGAGCTCTTCGCGTCCAGCGGCATATAAACGACATATAAAGCTGTTCATAttcatctgttgtttttttgggtgGGTGTGGTTCTCAAACGAGTGAGAATCTGATTTAGATAGAATATTCAACGATATGACTTTGAAGGATATTTCTGTCTTTGTTACTAATGTGCGGGGTGTTTGGTTCAGAAGATGATGAAGAGAAGACATTATCAGCGATGGAGGGAGATTCGTTCAATCTAAACATGAATCTTACCCAAGTACAGGGATTTAATCTGATACAGTGGAGGTTTGGAGGTGAAGGATCCAGCATTGCTAGAACCGATGGAAATGATTTCTCATATACTAATGACGAGATATTCAGAGACAGACTACAGCTGaatcagactggatctctgaccatcaagAACATGAGAACCAAACACTCTGGACTTTATAAACTACAGATCGACCACAGCAGTGGGACatcaaatgatacattttttgttgctgtctatgAGTCTCCATCCGTTATTGACGCTGGTGAATCTCAAACAAAGAGCGTGTCTGTGAAAGAGGGAGATTCTGTTACTCTTCAGACTGATGTTACTGAACTACATGGAGATGAGCTGATAGTGTGGAGGTTTGGAGGAGAAGGAAAACTCATCGCCAAGAGTGATGTAGAGACCAAGAGTtcaacattatatattactgatgagagattcagagacagactgcaGTTGAATgatcagactggatctctgaccgtcaaggaaatcaaaaacacagactCCGGACTTTATACAGTGAAGATCAGCAGCAGCGAACAGATGAGAAACAGGAGATTCATTGTTAATGTCGGTGGTTCAGGTGTGTCTTCCGGTGCTGTAGCAGGGATATCGGTTGCTTTCCTGCTGGCGATTTTAATTGTTGCTATTTACTATCGCTGCAAGATCTttaaacttcaaataaaactaaTGACAGATGAAAATAAGAATGTGATAGTAAAGGAGGGAGAAGACGTCACACTTCACACTGACGCTAATATAGAGGCAGAAGATCGGATCCTGTGGACGTTTCAAGCTCTAGGTGCTCGTATCGCTGAAATCAGAGAAGGTACCAGAGAGACATTTGATGGTGGTGATGGGAGATTCACAGACAGACTGATGCTGGATGAGACTGGATCCCTGACCATCAGAAACATCGAGATTAAACACAGTGGAGTCTATATACTACAGATCAAGAAATGTCGCAAGATAAGATGGCCCTCATACAAAAGATTCAAGGTTAAGGTTGATGAGTGGACTACATCGGTGATGGAGGGAGATGATGTCACTCTAAATATTAGTACTGAATTTAACGAAGTTAAGAAGGTAAAGTGGATGTTTGAAGATCAAGGCATGATGGCTCCCATAGCTGAGATCAATGTTGAGACCGGTGAGATCTTTCCGTTGGAGGGTAAAGCTGATGGGAGATTCAGaaacagactgaagctggatcatCTGAtgggatctctgaccatcaagAACACCGGACCTGAGCACTCTGGATACTATCACATCCAGATCAAACACAGTGGAGGGACCTCATTCAGGATGTTGATGGTTTCTGTCAGTGAGAGGAAGATATCGGCGGAGGAGGGAACGAATGTGACTCTAGAGATTGAAACACAGAAGGATGATCAGATTCTGTGGATGTTTGGAGCTGAAGAGACTCTCGTGGCTCAAATCAAAGGAGAGACCAGAGAGACACGTGATGTTCCTGATGAGAGATTCACaaacagactgaagctggaagaatctggatctctgaccatcagaaaCATCACAGCTGAACACACCGGAGCCTATAAAGCACAGATCGTCAGCCGCGGAAGTGTCTCATACAAGAAATTCAAGGTTGTTATGCTTGCGGAGTATGTGCCAGTGAAGAAGGGAGATGCTGTTACGCTACACACTGACTCCAAAACACAGAGAAACGATCAGATacgctggatgtttggagagAAAACTCTCCTCACTGAAATCAAAGAAGGGAGCGGAGAGATCTCTACATATGATGATGTTCTTAacgggagattcagagacagactgaagctggacgaGCGGACCGGATCACTGACCATCACTAACTTCACGACACAACACACTGGACTCTACACGGTGAAGATCAACAGAAGCGCAGAAACCTACAGAAACAagagttttgatgtttttgccaGAGTTTCAGTGATTTCAGAGGAAAAGGAGGTAAATGAAAATGAAGTGAAGTCTGATGGAGATCATCTGAATGTATGAAGACTGAAATCATCAACacagaaatgaagaaatgagCCGTGTCCTTTGGATTTAGATGAACGTACAGATAAAACCCATTTTAATGATGTTATGCTTCACACCTCTTTTAGCTTAGTAGTGGTCAGAAATATCATATagcttttataatatatattttaccacAGCAGTGTTTCTCTAACCACTGTATTTGCTGCtttatgtaataattaacaCTAAAATCTGGTTAATATTCAAGTTTTTCTTTGAGTTCGGATCATGTGTAGAAATTCATCAGACAGTGAGACGATTCAGAAACATCTCTGACCATTAATGACCATCTGACATTTCTCTTCTACTACTaaaatttgtgttattttgcTGTTAAATTGTAAATGCTGTGCATTTTTCTACTGCTGTATTATGTAAGTTAACATAAATGTAATCCGAAAGATATGTTCTGAAGTCAATCAGATGTGAATGTAAAAGTGAATCATGTGTAAATGTGAATTTAGAGTGTCTTTGTAAGAACTTCAGTTAGCCTTTGAGTTTAAAAACTAGTCATATCTGTCATGTTTATCAGTTGAtgtatcaaaactctttggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247671.1 lncRNA upstream 25607 3268123 ~ 3271755 (+) True LOC122327591
XR_006247670.1 lncRNA upstream 27596 3268123 ~ 3269766 (+) False LOC122327591
TU220330 lncRNA upstream 39656 3255462 ~ 3257706 (+) True G148968
TU220328 lncRNA upstream 42506 3253770 ~ 3254856 (+) False LOC122327575
TU220346 lncRNA upstream 51780 3245141 ~ 3245582 (+) True G148979
XR_006247669.1 lncRNA downstream 25965 3330719 ~ 3331434 (+) True LOC122327590
XR_006247674.1 lncRNA downstream 26877 3331631 ~ 3332025 (+) True LOC122327594
TU220404 lncRNA downstream 73332 3378086 ~ 3450520 (+) False G149013
TU220406 lncRNA downstream 73332 3378086 ~ 3380359 (+) True G149013
TU220417 lncRNA downstream 76745 3381499 ~ 3392064 (+) True G149019
XM_043222959.1 mRNA upstream 7757 3287920 ~ 3289605 (+) True zmp:0000000652
XM_043222882.1 mRNA upstream 17154 3278181 ~ 3280208 (+) True LOC122327483
XM_043222883.1 mRNA upstream 17159 3278181 ~ 3280203 (+) False LOC122327483
XM_043223029.1 mRNA upstream 42501 3253738 ~ 3254861 (+) True LOC122327575
XM_043222690.1 mRNA upstream 46733 3245640 ~ 3250629 (+) False si:dkey-222f2.1
XM_043223024.1 mRNA downstream 61283 3366037 ~ 3367223 (+) True LOC122327571
XM_043223838.1 mRNA downstream 347316 3652070 ~ 3654665 (+) True LOC122328128
XM_043223840.1 mRNA downstream 422787 3727541 ~ 3729956 (+) True LOC122328130
XM_043223843.1 mRNA downstream 458401 3763155 ~ 3765161 (+) True LOC122328133
XM_043222943.1 mRNA downstream 460494 3765248 ~ 3766219 (+) True LOC122327521
TU220341 other upstream 61575 3229267 ~ 3235787 (+) False dnase1l4.2
TU220342 other upstream 61575 3229267 ~ 3235787 (+) False dnase1l4.2
TU220340 other upstream 61575 3231548 ~ 3235787 (+) False dnase1l4.2
TU220335 other upstream 72872 3223628 ~ 3224490 (+) False tma7
XR_006247630.1 other upstream 144926 3114202 ~ 3152436 (+) False LOC122327293
TU220429 other downstream 266339 3571093 ~ 3574473 (+) True G149028
TU220368 other downstream 285885 3590639 ~ 3592373 (+) False LOC122327325
TU220366 other downstream 287907 3592661 ~ 3595300 (+) True G148992
TU220657 other downstream 472826 3777580 ~ 3778183 (+) False LOC122328138
TU220637 other downstream 547309 3852063 ~ 3853371 (+) True G149157

Expression Profile