RNA id: TU220417


Basic Information

Item Value
RNA id TU220417
length 354
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G149019
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3381499 ~ 3392064 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAAAGTGAAAAAACTCAGTAAGATCAGTTCTGGctttattatttctgtattagtGATGTTTCTTCAGTGatgctgtttaataataaatattcttaatACCACCACAGTAATGAAGACACATCACACTCTGCTGAGATCAAACAGTATCATCTTAATCTTTCTCCCTGTACTATATGTACCATGTTGTATGATACTTACCCCTGATTGTTCTAGGTTTCTTGCAGCGACGACGGTAGATCAGAAAAGCAGCAACAGTGAACAGAACACCAGCAATAAAACCACCAATAACACCACCAATAACACCACCAACACCAATCCCTGCTGCAGCAGCTGgagacagacctgaacctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220406 lncRNA upstream 1140 3378086 ~ 3380359 (+) True G149013
XR_006247674.1 lncRNA upstream 49474 3331631 ~ 3332025 (+) True LOC122327594
XR_006247669.1 lncRNA upstream 50065 3330719 ~ 3331434 (+) True LOC122327590
TU220372 lncRNA upstream 80255 3300601 ~ 3301244 (+) True G148994
XR_006247671.1 lncRNA upstream 109744 3268123 ~ 3271755 (+) True LOC122327591
TU220410 lncRNA downstream 4282 3396346 ~ 3415304 (+) True G149016
TU220413 lncRNA downstream 4688 3396752 ~ 3415304 (+) False G149016
TU220416 lncRNA downstream 7005 3399069 ~ 3421491 (+) True G149018
TU220399 lncRNA downstream 17023 3409087 ~ 3449153 (+) False G149012
TU220420 lncRNA downstream 141957 3534021 ~ 3544542 (+) False LOC122327599
XM_043223024.1 mRNA upstream 14276 3366037 ~ 3367223 (+) True LOC122327571
XM_043222605.1 mRNA upstream 76745 3297362 ~ 3304754 (+) False LOC122327325
XM_043222959.1 mRNA upstream 91894 3287920 ~ 3289605 (+) True zmp:0000000652
XM_043222882.1 mRNA upstream 101291 3278181 ~ 3280208 (+) True LOC122327483
XM_043223838.1 mRNA downstream 260006 3652070 ~ 3654665 (+) True LOC122328128
XM_043223840.1 mRNA downstream 335477 3727541 ~ 3729956 (+) True LOC122328130
XM_043223843.1 mRNA downstream 371091 3763155 ~ 3765161 (+) True LOC122328133
XM_043222943.1 mRNA downstream 373184 3765248 ~ 3766219 (+) True LOC122327521
XM_043223845.1 mRNA downstream 385520 3777584 ~ 3779676 (+) True LOC122328138
XR_006247633.1 other upstream 76745 3297362 ~ 3304754 (+) True LOC122327325
TU220341 other upstream 145712 3229267 ~ 3235787 (+) False dnase1l4.2
TU220342 other upstream 145712 3229267 ~ 3235787 (+) False dnase1l4.2
TU220340 other upstream 145712 3231548 ~ 3235787 (+) False dnase1l4.2
TU220335 other upstream 157009 3223628 ~ 3224490 (+) False tma7
TU220429 other downstream 179029 3571093 ~ 3574473 (+) True G149028
TU220368 other downstream 198575 3590639 ~ 3592373 (+) False LOC122327325
TU220366 other downstream 200597 3592661 ~ 3595300 (+) True G148992
TU220657 other downstream 385516 3777580 ~ 3778183 (+) False LOC122328138
TU220637 other downstream 459999 3852063 ~ 3853371 (+) True G149157

Expression Profile