RNA id: TU220641


Basic Information

Item Value
RNA id TU220641
length 652
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G149160
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3854883 ~ 3855624 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agattacaaaatgattttatcCATTGCTTTGGTGATCTTATCACCTTTCTCACAGGTAAAAACTGGAGCGATCTTTGATAACTTCCTGATCACCGATGATGTTGAGGAGGCTGAAAAATTTGGTACAGAAACGTGGGGTGCAACAAAGggaccagaaaagaaaatgaaggacctgcaggaagaggaagaagcgGAAGAAGCGTGAAGAGGAGGAAAAAGAGCAAGAAGGATGAGCGATAATGAGGGCGAGGACGGTGAAGATGAGGATGAGCCAGAAGAGGATGAGCACACAGAAGAACctcctgaggaggaagaggaggatgaggacgaTACGCTCCCTAAAGACGAGTTGTGAAGAGTAGTTTCCTTCTGAATGAGCAGATCTGATGTGTTTCTGatgtctttttctttatatatgtgGTGTGAATTTTTGGCCCTGCCCTTTTCTAGAAACATGTCGCATCTTGTAACTCCTGatttcttttggttttgctGCTAGAAGCCCCCACCCACCCAACACATTTATAGTACGACCTGATAACTTTAGATTAATTAATGTTTGGGTTTCTGTTCTGTCTCGAGTTGCGCAAGGTGAAATTCTAATGTATCATTTGTTGGatttgcacttttttaaaataaatgatttattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247690.1 lncRNA upstream 82329 3771572 ~ 3772554 (+) True LOC122327609
TU220442 lncRNA upstream 252307 3602292 ~ 3602576 (+) True G149036
TU220441 lncRNA upstream 252751 3601741 ~ 3602132 (+) True G149035
TU220437 lncRNA upstream 253364 3600669 ~ 3601519 (+) True G149034
TU220435 lncRNA upstream 253364 3600731 ~ 3601519 (+) False G149034
TU220675 lncRNA downstream 23310 3878934 ~ 3880028 (+) True G149189
TU220688 lncRNA downstream 80850 3936474 ~ 3936925 (+) True G149201
TU220695 lncRNA downstream 105835 3961459 ~ 3987717 (+) True G149206
TU220714 lncRNA downstream 120301 3975925 ~ 4004581 (+) False G149211
TU220718 lncRNA downstream 140940 3996564 ~ 4012835 (+) True G149214
XM_043222733.1 mRNA upstream 24216 3821995 ~ 3830667 (+) True LOC122327394
XM_043222734.1 mRNA upstream 24216 3821995 ~ 3830667 (+) False LOC122327394
XM_043222735.1 mRNA upstream 24216 3821995 ~ 3830667 (+) False LOC122327394
XM_043223849.1 mRNA upstream 41842 3810802 ~ 3813041 (+) True LOC122328141
XM_043222776.1 mRNA upstream 55962 3796756 ~ 3798921 (+) True LOC122327419
XM_043222808.1 mRNA downstream 115774 3971398 ~ 3992945 (+) True LOC122327441
XM_043222807.1 mRNA downstream 134346 3989970 ~ 3992945 (+) False LOC122327441
XM_043223855.1 mRNA downstream 192557 4048181 ~ 4050439 (+) True LOC122328148
XM_043222819.1 mRNA downstream 197903 4053527 ~ 4058293 (+) True LOC122327446
XM_043222818.1 mRNA downstream 198429 4054053 ~ 4058293 (+) False LOC122327446
TU220637 other upstream 1512 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 76700 3777580 ~ 3778183 (+) False LOC122328138
TU220366 other upstream 259583 3592661 ~ 3595300 (+) True G148992
TU220369 other upstream 262510 3297373 ~ 3592373 (+) False LOC122327325
TU220805 other downstream 381830 4237454 ~ 4238069 (+) False LOC122327447
XR_006247646.1 other downstream 857238 4712862 ~ 4715952 (+) True LOC122327517
TU221415 other downstream 1247905 5103529 ~ 5104436 (+) True G149646
TU221516 other downstream 1597541 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 1878784 5734408 ~ 5742638 (+) False LOC122327321

Expression Profile