RNA id: TU220718



Basic Information


Item Value
RNA id TU220718
length 308
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G149214
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3996564 ~ 4012835 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCGGTGGTGTATCTTCTGTTGAATATCTTTAATTcataaagtccagagtctgtggttctGGTGTCTCTGATTGTAAGAGTTCCAGTTTTATTGTCCAGCTCTAGTCGGCCTCTGAATCTCTCAGTACCTTCATTACACTGAACATCTGTACAGATAAAACTGAGATCTCCAACGATCTGAGCTATTCTAGTGTCTTTATAATACCACTTCATATATCTTTGTTGCTTTGTTTGGACATTAGTGTGTAGGGTGACTGAATCTCCATCCATCACAAAAGCCGACAGTCCATCAGTACTGCCCCCGAAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU220695 lncRNA upstream 8847 3961459 ~ 3987717 (+) True G149206
TU220688 lncRNA upstream 59639 3936474 ~ 3936925 (+) True G149201
TU220650 lncRNA upstream 70570 3730450 ~ 3925994 (+) True G149169
TU220729 lncRNA downstream 29668 4042503 ~ 4043959 (+) True G149219
TU220738 lncRNA downstream 42587 4055422 ~ 4057562 (+) False LOC122327446
TU220737 lncRNA downstream 45284 4058119 ~ 4059373 (+) False LOC122327446
TU220748 lncRNA downstream 66808 4079643 ~ 4080215 (+) True G149229
TU220751 lncRNA downstream 66808 4079643 ~ 4080091 (+) False G149229
XM_043222808.1 mRNA upstream 3619 3971398 ~ 3992945 (+) True LOC122327441
XM_043222807.1 mRNA upstream 3619 3989970 ~ 3992945 (+) False LOC122327441
XM_043222733.1 mRNA upstream 165897 3821995 ~ 3830667 (+) True LOC122327394
XM_043222734.1 mRNA upstream 165897 3821995 ~ 3830667 (+) False LOC122327394
XM_043222735.1 mRNA upstream 165897 3821995 ~ 3830667 (+) False LOC122327394
XM_043223855.1 mRNA downstream 35346 4048181 ~ 4050439 (+) True LOC122328148
XM_043222819.1 mRNA downstream 40692 4053527 ~ 4058293 (+) True LOC122327446
XM_043222818.1 mRNA downstream 41218 4054053 ~ 4058293 (+) False LOC122327446
XM_043222859.1 mRNA downstream 51633 4064468 ~ 4066492 (+) True LOC122327467
XM_043222589.1 mRNA downstream 81556 4094391 ~ 4112520 (+) True LOC122327317
TU220637 other upstream 143193 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 218381 3777580 ~ 3778183 (+) False LOC122328138
TU220366 other upstream 401264 3592661 ~ 3595300 (+) True G148992
TU220368 other upstream 404191 3590639 ~ 3592373 (+) False LOC122327325
TU220429 other upstream 422091 3571093 ~ 3574473 (+) True G149028
TU220805 other downstream 224619 4237454 ~ 4238069 (+) False LOC122327447
XR_006247646.1 other downstream 700027 4712862 ~ 4715952 (+) True LOC122327517
TU221415 other downstream 1090694 5103529 ~ 5104436 (+) True G149646
TU221516 other downstream 1440330 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 1721573 5734408 ~ 5742638 (+) False LOC122327321

Expression Profile