RNA id: XM_043222808.1


Basic Information

Item Value
RNA id XM_043222808.1
length 1408
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC122327441
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3971398 ~ 3992945 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTACCCAGCAGAACAAACACCTTTCTAAAGAAAACCCACCGCAGCGACTTTCAGTCTGACTCAGAAGCTGAACGTTTTTTAACATTGCATTTCTGTGCACAACAAATGGCCAAACTGAATTCATACACGCATCAGACCAGTATGAAGATTAGATATATAATGAGCGTTATGTTGAACTGAGAGGATTCATCAGCCGACGTTAGATCAGAGTCTTCACTGAAGTCTTAAAGAAAATGCTCTACGCACTTGTTTTGTTCTGCTTGCTCTCGAGTCTGATGGGTGCGTTTGGGGCTATGATAAAAGAAATGGAgtcagtgatggagggagattctGTTACTCTAAACATTGATGTTACTGAAATAGACGACATGGTGGACGACATAGTGTGGACAATTGGAGATGAAAAGAGTTTTATAGCTAAACATAACAGAAAGAAGCAAACCTTTTCGATatatgatgatgttcttgacgggagattcagagacagactgaagctggacaatcaaactggatctctgaccatcacgaaCATCTCAACTCTACACGCTGGAGTTTATAAAGTAGATCTTAGTGGACCTCAACtgacaacaaaaacattcaatgtTTCAGTCTATGCTCGTCTGCCTGTTCCTGTCATCAGCAGGAACTCTTCACAAtgttcatcatcttcatcttcatcatcaaaTTGTTCGTTGTTGTGTTCGGCGGTGAACgtgggtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagactcaACACATCAACGTTACTCAGCTCTGTCAGCCATGTCCAgCACTGGACTCGCATTCTCCTTCACAAGAAGACTCACTTCCAATACTGTTGATCTCTGCTGGATCTCTGTTCGCTTTAGCTCTAATTACAATCTCCTGCATCTACAGGAAACGTAAAAGAGCCGATCAAAAAGTTCAGACTTGTATTGAAGAAATAACGTATGCAGAgacaacattcttcaaaagaaAATCACGCAGATTGAAAATCGGAGAGGAGACTCATGTGGACTATGCATCTGTCGTCATATGATTAAACAAAGACGTTTTCATTGGTTCAACTCTTTAGACACCCTCAGATGGTAGAGCTCTCAAGCTGGTACGAATCACAAAAAACATCCAACGCAACACATTTACATGAACGACGATTAAAGCTAGCTTTGAAAGCTTTCTGCTAATCACTCTCCAAAGCCATGCCTCTTGTCTCTTGACACTTGACGCAGCGACTGCTATCGGGCCGCGAAAAGACTTTTCGGGGCGTGGAAAGACCCGACAGACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220688 lncRNA upstream 34473 3936474 ~ 3936925 (+) True G149201
TU220650 lncRNA upstream 45404 3730450 ~ 3925994 (+) True G149169
TU220675 lncRNA upstream 91370 3878934 ~ 3880028 (+) True G149189
TU220641 lncRNA upstream 115774 3854883 ~ 3855624 (+) True G149160
XR_006247690.1 lncRNA upstream 198844 3771572 ~ 3772554 (+) True LOC122327609
TU220718 lncRNA downstream 3619 3996564 ~ 4012835 (+) True G149214
TU220713 lncRNA downstream 4466 3997411 ~ 4039711 (+) True G149211
TU220715 lncRNA downstream 4466 3997411 ~ 4007597 (+) False G149211
TU220729 lncRNA downstream 49558 4042503 ~ 4043959 (+) True G149219
TU220738 lncRNA downstream 62477 4055422 ~ 4057562 (+) False LOC122327446
XM_043222733.1 mRNA upstream 140731 3821995 ~ 3830667 (+) True LOC122327394
XM_043222734.1 mRNA upstream 140731 3821995 ~ 3830667 (+) False LOC122327394
XM_043222735.1 mRNA upstream 140731 3821995 ~ 3830667 (+) False LOC122327394
XM_043223849.1 mRNA upstream 158357 3810802 ~ 3813041 (+) True LOC122328141
XM_043222776.1 mRNA upstream 172477 3796756 ~ 3798921 (+) True LOC122327419
XM_043223855.1 mRNA downstream 55236 4048181 ~ 4050439 (+) True LOC122328148
XM_043222819.1 mRNA downstream 60582 4053527 ~ 4058293 (+) True LOC122327446
XM_043222818.1 mRNA downstream 61108 4054053 ~ 4058293 (+) False LOC122327446
XM_043222859.1 mRNA downstream 71523 4064468 ~ 4066492 (+) True LOC122327467
XM_043222589.1 mRNA downstream 101446 4094391 ~ 4112520 (+) True LOC122327317
TU220637 other upstream 118027 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 193215 3777580 ~ 3778183 (+) False LOC122328138
TU220366 other upstream 376098 3592661 ~ 3595300 (+) True G148992
TU220371 other upstream 379025 3297373 ~ 3592373 (+) False LOC122327325
TU220805 other downstream 244509 4237454 ~ 4238069 (+) False LOC122327447
XR_006247646.1 other downstream 719917 4712862 ~ 4715952 (+) True LOC122327517
TU221415 other downstream 1110584 5103529 ~ 5104436 (+) True G149646
TU221516 other downstream 1460220 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 1741463 5734408 ~ 5742638 (+) False LOC122327321

Expression Profile