RNA id: TU220714


Basic Information

Item Value
RNA id TU220714
length 1677
lncRNA type sense_over
GC content 0.34
exon number 3
gene id G149211
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3975925 ~ 4039711 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGAATTGaacaaaatcaatacaaaattGCCGAGTATGTGgtaaataaacacattgcattacacttCAATATCACCCCAAACAAACAACCTGGTGCACATTTTCgtattatagaaaatatataaccAATGACAAATAGaacaaatatacaacataaaaacTCGCGATTTAAAAACTGACGTCTCTGATGTGCGTGTGCCATCAAGGTAGTAAACAATGTATGAGTACTGAGTTCTAGATTGTGGTAGAACACTTTAGACAAGTTGTTGCTGATTTTAGAGTGAAGGGTTCAGAGAAACTACGGACAGGTGAGATCTAACTAGGGTTAGAGCTGCTTATCACTTTTGACCAACAGGTGGCGctgtaatgaaataatattagtatttcCTTTGTGAGAGGACAATAGCAATAGAACTCAGGCACAGAGTCTGTTGTCATTTCATCAACGCTTTTCACAGATATAGTAGTGGTGCCgtataaaaagtatttcttCTATCCACGACGATAAACGAACGCAAACAAAAGCTATTATTCAACTTTTTGAGTACAATGAGGGCACGGtggtaaaaacatttcaagtttAACAAGGACACGTCAATGTGTTTGTAAAATAGAGCATTTcaatagcaaaaatataaaatacaaaaaaatacaaaccttacaattttgaaaaaaaaaattaaatctcacTGGCAGCCTCGGGCTCGATCTCAATGTGATTAGTAATGTTCTCTCGAGCATCGTGTGATTAAAAGAGCTCTCTTTAAAATCATCCATCAGTGGACTGTCGCTATGATCAGGCCACAAATCATGAACACCATTCACCTGTAAGAAAACAGATCGAAGGTGACtaacgattaaaaaaaaaaaaattagacaaGGAACGTAAgtgcttatttttatgttatgttctTTTCCTAAATTGAACTGataaactacattaaaactGTCATCTTCtggttttacagtaaaatacagttgTTGCCAAAAATATTGGCGCCTTTGAATAAAACCTTCACCGAAGCTATCAATAAGTGTGATGGTTTctgaaacaaactaaataaatcacacaaacaTGTTGCCAGCTTACAGATCTGAATCTTCTTCTAGGGAAACCGATTCAGTGTTCATAGTATCTTACCTGAGAACTGTCCTTCATCTTAGTGTCTGTTTAAACAACAACGACAAACTCAATTAAACACGACATTACTATTACAtatctatttaataaatacacctCGTTAAATCAGCCGTATGTGtaacacacagatatattatttatatttgaatgatgAACAGCAGAAAGTACAGTAGTAAGTGTAATGTATGAAAACCAATGACTTCAACCGAAGAGGAAACAGATTATAATAACGACAAAGTAATTAAAGTGTTGATGTAAACTGAATCATTTTGGGAAACAAATAGTTTTTATCAAGTGGTCTTAATGAACCGGTCACATAAAAAGACTTCTCATCACTAATGTAATACTcacctctctttctcactcGATGTTGGTAAAAAAGCACGCAAACAGTTGCACCAATAAGAAGCAGGGCAGCAGCACATATTCCTGCTATTTGACCTGCAGACAGACCTAAACCTGAAAGAGTAAATAAGTCTTTAGTACTAGAGtgcaaattttacatttttcttttgcaacTTTTTACACTTTTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220688 lncRNA upstream 39000 3936474 ~ 3936925 (+) True G149201
TU220650 lncRNA upstream 49931 3730450 ~ 3925994 (+) True G149169
TU220729 lncRNA downstream 37922 4042503 ~ 4043959 (+) True G149219
TU220738 lncRNA downstream 50841 4055422 ~ 4057562 (+) False LOC122327446
TU220737 lncRNA downstream 53538 4058119 ~ 4059373 (+) False LOC122327446
TU220748 lncRNA downstream 75062 4079643 ~ 4080215 (+) True G149229
TU220751 lncRNA downstream 75062 4079643 ~ 4080091 (+) False G149229
XM_043222733.1 mRNA upstream 145258 3821995 ~ 3830667 (+) True LOC122327394
XM_043222734.1 mRNA upstream 145258 3821995 ~ 3830667 (+) False LOC122327394
XM_043222735.1 mRNA upstream 145258 3821995 ~ 3830667 (+) False LOC122327394
XM_043223849.1 mRNA upstream 162884 3810802 ~ 3813041 (+) True LOC122328141
XM_043222776.1 mRNA upstream 177004 3796756 ~ 3798921 (+) True LOC122327419
XM_043223855.1 mRNA downstream 43600 4048181 ~ 4050439 (+) True LOC122328148
XM_043222819.1 mRNA downstream 48946 4053527 ~ 4058293 (+) True LOC122327446
XM_043222818.1 mRNA downstream 49472 4054053 ~ 4058293 (+) False LOC122327446
XM_043222859.1 mRNA downstream 59887 4064468 ~ 4066492 (+) True LOC122327467
XM_043222589.1 mRNA downstream 89810 4094391 ~ 4112520 (+) True LOC122327317
TU220637 other upstream 122554 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 197742 3777580 ~ 3778183 (+) False LOC122328138
TU220366 other upstream 380625 3592661 ~ 3595300 (+) True G148992
TU220368 other upstream 383552 3590639 ~ 3592373 (+) False LOC122327325
TU220429 other upstream 401452 3571093 ~ 3574473 (+) True G149028
TU220805 other downstream 232873 4237454 ~ 4238069 (+) False LOC122327447
XR_006247646.1 other downstream 708281 4712862 ~ 4715952 (+) True LOC122327517
TU221415 other downstream 1098948 5103529 ~ 5104436 (+) True G149646
TU221516 other downstream 1448584 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 1729827 5734408 ~ 5742638 (+) False LOC122327321

Expression Profile