RNA id: XM_043222860.1


Basic Information

Item Value
RNA id XM_043222860.1
length 1071
RNA type mRNA
GC content 0.44
exon number 9
gene id dnase1l4.2
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3229267 ~ 3238958 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACCATGAAGATCGCATCTTTCAACATCAGACGTTTGGGTCCAAGCAAGCTGTCagacaaaaacattgtaaaatatctCATTAAGATCTTCTCTCGGTACAGTATAATCATTCTTCTTGAGGTGGTGGACAAATCGGGCAAATCTCTAGACAAATTTCTGCAGGAGCTCAACAGCACCGGAGCTAATAAGAAACGCCCCTTCACTATGGTGGGAAGCTCCAGGCTGGGACGGACTCTTTATAAGGAacagtttgtctgtttttacagACAAAGTGAGGCCGAGCTGGTCGACACGTACCAATACGAAGACAATCAAGTGGGTGACGAGGATGCTTTCTCTCGGGAGCCCTTCATCTTGCGTTTCTGCTGTAAACACACAGTGCTAAAAGACTTGGTGTTGATCCCTGTTCACACAAAGCCCAAAGACTCACAGAAGGAACTAGATGAACTATACGACGTCTTTCTGGATGTCAAAGATAAATGGGAAACGGATAATGTCATGATTCTTGGAGACTTCAACGCGGACGGCGCCTACGTCTCCAAGAAGAAGATGAAGTCCATTAGGATCCGCAGCGATCCTGATTTCCACTGGCTGATTGGGGACGATGTGGACACCACAGTTATCCGGTCCAACGATCACACTTACGACAGgATCGTGGTGTACAAAGAGGACATGCtaaactctcttttttttccttctgcaaTTGGGTCGCTGTCTGTGCCAAGATCTGCAAAATCTTTCAACTTTCAGGAAGCCTACAAACTTTCAGACGAACTTGCCCTGGAAATCAGTGATCATTACCCAGTGGAGGTGAGTCTGAAGAAGTCGTCTGCGGCAAAGACCGGCGGCAAAACCAAAGCCAAAACGCAGAAGCGCAAAGCATGATGGGATGCCAATGCACGCTGCAAACTTAATTTCGCTCCACTGAAGGAGAGATGTTACCTCTTCACAAAAAAATTCAggtcttaaaaataatttaagagcAGTTAACTTTTCATGCCAATTTAATTACGGTTTACTTCAAATGcttataaattatgcaaatctcaaaataaacttttcatttgta

Function

GO:

id name namespace
GO:0006308 DNA catabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0004519 endonuclease activity molecular_function
GO:0004536 deoxyribonuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220338 lncRNA upstream 3340 3227704 ~ 3228830 (+) True G148975
TU220336 lncRNA upstream 5591 3225209 ~ 3226579 (+) True G148973
TU220299 lncRNA upstream 43016 3183528 ~ 3189154 (+) True G148942
TU220266 lncRNA upstream 129267 3102572 ~ 3102903 (+) True G148926
TU220076 lncRNA upstream 239758 2990285 ~ 2992412 (+) True G148830
TU220346 lncRNA downstream 6183 3245141 ~ 3245582 (+) True G148979
TU220328 lncRNA downstream 14812 3253770 ~ 3254856 (+) False LOC122327575
TU220330 lncRNA downstream 16504 3255462 ~ 3257706 (+) True G148968
XR_006247671.1 lncRNA downstream 29165 3268123 ~ 3271755 (+) True LOC122327591
XR_006247670.1 lncRNA downstream 29165 3268123 ~ 3269766 (+) False LOC122327591
XM_043223028.1 mRNA upstream 7679 3223617 ~ 3224491 (+) True tma7
XM_043222798.1 mRNA upstream 35806 3193319 ~ 3196364 (+) True zgc:171566
XM_043222888.1 mRNA upstream 39068 3188402 ~ 3193102 (+) False LOC122327485
XM_043222889.1 mRNA upstream 39068 3189888 ~ 3193102 (+) False LOC122327485
XM_043222887.1 mRNA upstream 39068 3190282 ~ 3193102 (+) True LOC122327485
XM_043222690.1 mRNA downstream 6682 3245640 ~ 3250629 (+) False si:dkey-222f2.1
XM_043222689.1 mRNA downstream 6706 3245664 ~ 3250629 (+) True si:dkey-222f2.1
XM_043223029.1 mRNA downstream 14780 3253738 ~ 3254861 (+) True LOC122327575
XM_043222882.1 mRNA downstream 39223 3278181 ~ 3280208 (+) True LOC122327483
XM_043222883.1 mRNA downstream 39223 3278181 ~ 3280203 (+) False LOC122327483
TU220335 other upstream 7680 3223628 ~ 3224490 (+) False tma7
XR_006247629.1 other upstream 79605 3114202 ~ 3152565 (+) False LOC122327293
XR_006247630.1 other upstream 79734 3114202 ~ 3152436 (+) False LOC122327293
XR_006247636.1 other upstream 184394 3044638 ~ 3047776 (+) False loxl5a
TU219297 other upstream 1086610 2143885 ~ 2145560 (+) True G148388
XR_006247633.1 other downstream 58404 3297362 ~ 3304754 (+) True LOC122327325
TU220369 other downstream 58415 3297373 ~ 3592373 (+) False LOC122327325
TU220371 other downstream 58415 3297373 ~ 3592373 (+) False LOC122327325
TU220429 other downstream 332135 3571093 ~ 3574473 (+) True G149028
TU220368 other downstream 351681 3590639 ~ 3592373 (+) False LOC122327325

Expression Profile