LOC122327485 (LOC107718467,LOC107549388,LOC107698584,LOC107702645,LOC107566368)


Basic Information

Item Value
gene id LOC122327485
gene name LOC107718467,LOC107549388,LOC107698584,LOC107702645,LOC107566368
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3188402 ~ 3193102 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222887.1
tgtgtgtgtgtgtgtattgaacAGTCATCAGCTTCTGAGACAAACTGAAACGTGCGGTCGATCTGACATCGTTTTATCTGAATGTGGTGTTGTCGAGCGGACGGAAtagcttgtgtttgtgtctgtgctgCATGTGGTTGAATGGCGTCTTCCTGGCCTTGTGACGGGAACCACAGGCTTTTTCTTTTGATATAGATAAACTAGGTAAAGTAGTTCGTTTGTCAATACTGTTTAACGCTAGGTTGCCAAAGgctatgtaatattttatagagAAACACTTTAACCTTTACAAGAAATCGTACGTTTGTAGGTTGCAGTTTGCACactagtaaagtaaaatatcgatattgttttaatatccGAACCCTTAACACGATTGGCTGTCGTGAATTATAAAGAGAAGACACGCTTCTATTGTACTTTCTATGGTTAAATATGTAGGCTAAGTAGGAGAAATAAAACCAGCCCCATCTGCACGCCCCGGGGAGGATGTAAAATAAGGGAGGATTCGCACTTGGCCACCATTTCAAGTGATGCTCTCTCAGAAAGCACagcaaactgctgataaaaatgCTTCATGGGTTTGTTTGCTTTGGTTTGTGCTTCTGGCGCATTGTCGGTATGTTTGGTGCTGAGGCAGATGAGATCGTGTCATTGTCGGTGATGGAGGGCGATTCTGTCACGCTGAAGACTGGTGTGACCAAAATACAAGAGGACGATCTGATAATGTGGATGAGCGGAAACTACTCTATCGCTAAACTCAGCATATCATCCCAAGTCATCTCTGAAACTCACGACACGTTCAGAggcagactgaagctggatgaTCAGACCGGGTCCCTCACCATCACAAACACGAGAACCACAGACTCCGGACTTTACAAAGCGCAGATGATTGGACAGCAAGTGTCAAAGAAAACGTTCAATGTTGCCGTCGTAGCTAGTCTTCCCGTTCCTGTCCTCGCCAGTTACTGTCCTCAAAATCCTTCATCGGGATCATCCAGATGTTTGCTGCTGTGTTCGGCGGTGAACGTGGGTCacgtgactctctcctggtacaaaggagacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaacatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgGACTTCAGTCAGCTCTGTCAGCCATGTTCAGaATGCGTCTGCTGTTGTAATTCTACTGAAGCTGTGATCCAGTTGGTCCTCTCTGCTCTGGTGGGCGTGGCTACTGCTGTTGTTCTGGTTTATGACATCAGATCCAGAAGAGCTGAACAGAAAAGAAGAGCACTGAAATCATTATCAGATAATAACTGACTTACTGTAACAGAAATTAAAtcctattatatatatatatatataattttgtaaatgcaCTGTAATACTCAATAGCTTCTAATTCAACTAATTGTGCAATCATATTTTCACCTAACATTCGTTTCCgaattaaaacaaaccaaatcaaaCCCCTCTTCTCTTTTCTGCTTACTAAACactttcttctgtttttgtgGTCTGGAAGGTAGCGGGCCTGTTCTCTGTCAACATCTAGGCTAAGCACTGACAGGAAGTTGGTTAGTTTCACAAAGAGCTTGCCCTTTAGTGGCAGCACATTCTGTCTGTAATACTGTTAGCCACAACGTTCAGAAAGTTATCTGCGTGTCCTCGGCCAAGCCAGGAACGTTTTGAACTTTTGCGGCACTTACGCATCTTTGTTCGAGAACCAAGTTTACTTTTTAGCAACCCTCAATAAAACTCTTTTCTGGTAGGTCGAGTCCTGTTGTCTTTATGTGTTACATAACCTACTTTCTTAAAGGGCGCTTATTCACCCAACACAGCTAATGCACCTAGGTCACTGGTGCTAATTGGAGATTATGATGATTGTCACAGATATTTGTTTtcgtattgttttaataatgccaTGCAATGCTTTCCTTCCTACAGAATTTGGAAAACAATGGTTAAATAGCTTTTCTATTGTGCATTC
>XM_043222888.1
atgatgaagATAATCCAAGATTGTACAAAGTGTCTTGCAGTTCCACCTGATCACCGCATGCAGAAAACAGATATGCCTTGGCTGCATGCTAGGTCGACCTGAATCAAGACCAGATCTCCAGCAGATCAagtctatgtatGTATGTTTGGTGCTGAGGCAGATGAGATCGTGTCATTGTCGGTGATGGAGGGCGATTCTGTCACGCTGAAGACTGGTGTGACCAAAATACAAGAGGACGATCTGATAATGTGGATGAGCGGAAACTACTCTATCGCTAAACTCAGCATATCATCCCAAGTCATCTCTGAAACTCACGACACGTTCAGAggcagactgaagctggatgaTCAGACCGGGTCCCTCACCATCACAAACACGAGAACCACAGACTCCGGACTTTACAAAGCGCAGATGATTGGACAGCAAGTGTCAAAGAAAACGTTCAATGTTGCCGTCGTAGCTAGTCTTCCCGTTCCTGTCCTCGCCAGTTACTGTCCTCAAAATCCTTCATCGGGATCATCCAGATGTTTGCTGCTGTGTTCGGCGGTGAACGTGGGTCacgtgactctctcctggtacaaaggagacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaacatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgGACTTCAGTCAGCTCTGTCAGCCATGTTCAGaATGCGTCTGCTGTTGTAATTCTACTGAAGCTGTGATCCAGTTGGTCCTCTCTGCTCTGGTGGGCGTGGCTACTGCTGTTGTTCTGGTTTATGACATCAGATCCAGAAGAGCTGAACAGAAAAGAAGAGCACTGAAATCATTATCAGATAATAACTGACTTACTGTAACAGAAATTAAAtcctattatatatatatatatataattttgtaaatgcaCTGTAATACTCAATAGCTTCTAATTCAACTAATTGTGCAATCATATTTTCACCTAACATTCGTTTCCgaattaaaacaaaccaaatcaaaCCCCTCTTCTCTTTTCTGCTTACTAAACactttcttctgtttttgtgGTCTGGAAGGTAGCGGGCCTGTTCTCTGTCAACATCTAGGCTAAGCACTGACAGGAAGTTGGTTAGTTTCACAAAGAGCTTGCCCTTTAGTGGCAGCACATTCTGTCTGTAATACTGTTAGCCACAACGTTCAGAAAGTTATCTGCGTGTCCTCGGCCAAGCCAGGAACGTTTTGAACTTTTGCGGCACTTACGCATCTTTGTTCGAGAACCAAGTTTACTTTTTAGCAACCCTCAATAAAACTCTTTTCTGGTAGGTCGAGTCCTGTTGTCTTTATGTGTTACATAACCTACTTTCTTAAAGGGCGCTTATTCACCCAACACAGCTAATGCACCTAGGTCACTGGTGCTAATTGGAGATTATGATGATTGTCACAGATATTTGTTTtcgtattgttttaataatgccaTGCAATGCTTTCCTTCCTACAGAATTTGGAAAACAATGGTTAAATAGCTTTTCTATTGTGCATTC
>XM_043222889.1
TGTTTCCTAGAAGTGTCTTGCAGTTCCACCTGATCACCGCATGCAGAAAACAGATATGCCTTGGCTGCATGCTAGGTCGACCTGAATCAAGACCAGATCTCCAGCAGATCAagtctatgtatGTATGTTTGGTGCTGAGGCAGATGAGATCGTGTCATTGTCGGTGATGGAGGGCGATTCTGTCACGCTGAAGACTGGTGTGACCAAAATACAAGAGGACGATCTGATAATGTGGATGAGCGGAAACTACTCTATCGCTAAACTCAGCATATCATCCCAAGTCATCTCTGAAACTCACGACACGTTCAGAggcagactgaagctggatgaTCAGACCGGGTCCCTCACCATCACAAACACGAGAACCACAGACTCCGGACTTTACAAAGCGCAGATGATTGGACAGCAAGTGTCAAAGAAAACGTTCAATGTTGCCGTCGTAGCTAGTCTTCCCGTTCCTGTCCTCGCCAGTTACTGTCCTCAAAATCCTTCATCGGGATCATCCAGATGTTTGCTGCTGTGTTCGGCGGTGAACGTGGGTCacgtgactctctcctggtacaaaggagacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaacatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgGACTTCAGTCAGCTCTGTCAGCCATGTTCAGaATGCGTCTGCTGTTGTAATTCTACTGAAGCTGTGATCCAGTTGGTCCTCTCTGCTCTGGTGGGCGTGGCTACTGCTGTTGTTCTGGTTTATGACATCAGATCCAGAAGAGCTGAACAGAAAAGAAGAGCACTGAAATCATTATCAGATAATAACTGACTTACTGTAACAGAAATTAAAtcctattatatatatatatatataattttgtaaatgcaCTGTAATACTCAATAGCTTCTAATTCAACTAATTGTGCAATCATATTTTCACCTAACATTCGTTTCCgaattaaaacaaaccaaatcaaaCCCCTCTTCTCTTTTCTGCTTACTAAACactttcttctgtttttgtgGTCTGGAAGGTAGCGGGCCTGTTCTCTGTCAACATCTAGGCTAAGCACTGACAGGAAGTTGGTTAGTTTCACAAAGAGCTTGCCCTTTAGTGGCAGCACATTCTGTCTGTAATACTGTTAGCCACAACGTTCAGAAAGTTATCTGCGTGTCCTCGGCCAAGCCAGGAACGTTTTGAACTTTTGCGGCACTTACGCATCTTTGTTCGAGAACCAAGTTTACTTTTTAGCAACCCTCAATAAAACTCTTTTCTGGTAGGTCGAGTCCTGTTGTCTTTATGTGTTACATAACCTACTTTCTTAAAGGGCGCTTATTCACCCAACACAGCTAATGCACCTAGGTCACTGGTGCTAATTGGAGATTATGATGATTGTCACAGATATTTGTTTtcgtattgttttaataatgccaTGCAATGCTTTCCTTCCTACAGAATTTGGAAAACAATGGTTAAATAGCTTTTCTATTGTGCATTC

Function

NR:

description
PREDICTED: natural killer cell receptor 2B4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222887.1 True 2059 mRNA 0.43 4 3190282 3193102
XM_043222888.1 False 1579 mRNA 0.43 5 3188402 3193102
XM_043222889.1 False 1562 mRNA 0.43 4 3189888 3193102

Neighbor

gene id symbol gene type direction distance location
LOC122327489 LOC107702645,LOC107566368 coding upstream 7498 3175884 ~ 3180904 (+)
LOC122327513 NA coding upstream 21581 3163691 ~ 3166821 (+)
cers1 cers1,LOC107702637,LOC107566364,LOC107698599,LOC107733357 coding upstream 108487 3066926 ~ 3079915 (+)
mydgf mydgf,LOC107727555,LOC107702644,LOC107733317,LOC107698601,LOC107549393,LOC566052,LOC107566370 coding upstream 135683 3049125 ~ 3052719 (+)
LOC122327553 mibp,LOC107566367,LOC107702642,LOC107727561,LOC107734093,LOC107698603,LOC107549391 coding upstream 143911 3041516 ~ 3044491 (+)
zgc:171566 zgc:171566,LOC107718463,LOC107698580,LOC107549371,LOC107702651,LOC107712179,LOC108444051 coding downstream 217 3193319 ~ 3196364 (+)
si:dkey-222f2.1 si:dkey-222f2.1,LOC107712176,LOC107694007,LOC107718458,LOC107698573 coding downstream 52538 3245640 ~ 3250629 (+)
LOC122327483 NA coding downstream 85079 3278181 ~ 3280208 (+)
zmp:0000000652 NA coding downstream 94818 3287920 ~ 3289605 (+)
LOC122327571 NA coding downstream 172935 3366037 ~ 3367223 (+)
G148926 NA non-coding upstream 85499 3102572 ~ 3102903 (+)
G148830 NA non-coding upstream 195990 2990285 ~ 2992412 (+)
LOC122327636 NA non-coding upstream 332318 2806603 ~ 2856084 (+)
G148781 fbn2b,ctxn1,LOC107549363,LOC107742800,LOC107704489,LOC108441290,LOC106573568 non-coding upstream 350453 2770775 ~ 2837949 (+)
G148742 NA non-coding upstream 669260 2518930 ~ 2519142 (+)
G148973 NA non-coding downstream 32107 3225209 ~ 3226579 (+)
G148975 NA non-coding downstream 34602 3227704 ~ 3228830 (+)
G148979 NA non-coding downstream 52039 3245141 ~ 3245582 (+)
G148968 NA non-coding downstream 62360 3255462 ~ 3257706 (+)
LOC122327591 NA non-coding downstream 75021 3268123 ~ 3271755 (+)
LOC122327293 myo9b,LOC107566354,LOC107702620,LOC107549373,LOC107698595,LOC107718479 other upstream 34821 3114201 ~ 3153581 (+)
loxl5a loxl5a,LOC107698563,LOC107549379,LOC107733348,LOC108430202,LOC105011451 other upstream 140270 3044638 ~ 3048132 (+)
LOC122327475 NA other upstream 225399 2959100 ~ 2963003 (+)
G148388 NA other upstream 1042842 2143885 ~ 2145560 (+)
LOC122327951 NA other upstream 1331260 1854867 ~ 1857142 (+)
tma7 NA other downstream 30515 3223617 ~ 3224491 (+)
dnase1l4.2 LOC107549369,LOC107718466,LOC107712178,LOC107698583,LOC107566352,LOC107702653 other downstream 36165 3229267 ~ 3238958 (+)
LOC122327575 NA other downstream 60636 3253738 ~ 3254861 (+)
LOC122327325 NA other downstream 104260 3297362 ~ 3592373 (+)
G149028 NA other downstream 377991 3571093 ~ 3574473 (+)

Expression


Co-expression Network