LOC122327489 (LOC107702645,LOC107566368)


Basic Information

Item Value
gene id LOC122327489
gene name LOC107702645,LOC107566368
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3175884 ~ 3180904 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222894.1
CGATAAAAGCTCAAACATGACCACTGTGGCCGCAGCAAGCATGTAGAGACTAAGGTGTCACATCCTGCTAGGCGAAGACCGCTCGCTTTGAGCGTTTTCATCGTGTTTCGAGCTGCTGATTGTTCTGGGAGCGGCTTGAAAATGGTTCCTgcgtttgttttgttctgtttgtctTTATCCGGGCTTGTCGGTGCCTTTGGTGTTGAGACGGATGAAATGAAGTCGGTGTCGGTGACGGAGGGAGACTCTGTCACTCTGCAGACcgatgctgaaataaaaaaagatgatctGATTCTGTGGAGATTCGGAGCCGAAGACTCTCCCTTGGCGGAAGTCAACAGATCGGCCCAGATCATCTCAGCATCTGAAAGCACCAAAGGATTCGAAGATAGGTTGCACTTGGACCCCCGGACTGGATCTCTCACCGTCAGGAACATCCGAACCGATCACTCTGGGATATTTAAAGCACAGATCATCAGAAATAAGATGATCAGGAAAGTGTTTAATGTCAGTGTTTATGCTCGTCTGTCTTATCCTGTCATCAGAAGAGACTGTTtctcttcatcatcttcatcatcttgtTCGTTGTTGTGTTCGGTGGTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcaacATCAGTCTCTCTTTACATCTGGAGGTGGaatatcaggataaaaacacttacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCACTGAAGTCTGTCAGATACATTCAGATTCAGAATGTGTCTGCTGTTGTGACGCTACTAAAGCTGTGATCCAATTGGTCATCTCTGCTTTGGTGGGCGTGGCTATTGTTGTAGTTTTGGGTTTCGAAATCACGTCCAGAAAAGCTGAACAGAAAAGACGAACTCCAGTTCTTCGCTGATTACAACCATCCCTTTTTGTACCCGTTTTTGCtcttctctttattttctttttgaaaatggTTGAAggaataaaagtgtttttatgcgCATtgatttttcaaatgatttgacATGTTTTGAATTAtacacccaaaaat
>XM_043222895.1
CACGTTCACCACCGAACACAACAACGAacaagatgatgaagatgatgaagaacaCTGTGAGGAGTCTCTGCTGATGACAGGAACAGACAGACGAGCTGGAAACATGACAAAAGAAACATGCAAAAGGTGACAAGCTGTAGCGAATGCATATGACCACGAAAAGAGTTGAAAGACCTGATATAACGCTCAACAGGTGCCTTTGGTGTTGAGACGGATGAAATGAAGTCGGTGTCGGTGACGGAGGGAGACTCTGTCACTCTGCAGACcgatgctgaaataaaaaaagatgatctGATTCTGTGGAGATTCGGAGCCGAAGACTCTCCCTTGGCGGAAGTCAACAGATCGGCCCAGATCATCTCAGCATCTGAAAGCACCAAAGGATTCGAAGATAGGTTGCACTTGGACCCCCGGACTGGATCTCTCACCGTCAGGAACATCCGAACCGATCACTCTGGGATATTTAAAGCACAGATCATCAGAAATAAGATGATCAGGAAAGTGTTTAATGTCAGTGTTTATGCTCGTCTGTCTTATCCTGTCATCAGAAGAGACTGTTtctcttcatcatcttcatcatcttgtTCGTTGTTGTGTTCGGTGGTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcaacATCAGTCTCTCTTTACATCTGGAGGTGGaatatcaggataaaaacacttacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCACTGAAGTCTGTCAGATACATTCAGATTCAGAATGTGTCTGCTGTTGTGACGCTACTAAAGCTGTGATCCAATTGGTCATCTCTGCTTTGGTGGGCGTGGCTATTGTTGTAGTTTTGGGTTTCGAAATCACGTCCAGAAAAGCTGAACAGAAAAGACGAACTCCAGTTCTTCGCTGATTACAACCATCCCTTTTTGTACCCGTTTTTGCtcttctctttattttctttttgaaaatggTTGAAggaataaaagtgtttttatgcgCATtgatttttcaaatgatttgacATGTTTTGAATTAtacacccaaaaata
>XM_043222896.1
AAGCATGTAGAGACTAAGGTGTCACATCCTGCTAGGCGAAGACCGCTCGCTTTGAGCGTTTTCATCGTGTTTCGAGCTGCTGATTGTTCTGGGAGCGGCTTGAAAATGGTGCCTTTGGTGTTGAGACGGATGAAATGAAGTCGGTGTCGGTGACGGAGGGAGACTCTGTCACTCTGCAGACcgatgctgaaataaaaaaagatgatctGATTCTGTGGAGATTCGGAGCCGAAGACTCTCCCTTGGCGGAAGTCAACAGATCGGCCCAGATCATCTCAGCATCTGAAAGCACCAAAGGATTCGAAGATAGGTTGCACTTGGACCCCCGGACTGGATCTCTCACCGTCAGGAACATCCGAACCGATCACTCTGGGATATTTAAAGCACAGATCATCAGAAATAAGATGATCAGGAAAGTGTTTAATGTCAGTGTTTATGCTCGTCTGTCTTATCCTGTCATCAGAAGAGACTGTTtctcttcatcatcttcatcatcttgtTCGTTGTTGTGTTCGGTGGTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcaacATCAGTCTCTCTTTACATCTGGAGGTGGaatatcaggataaaaacacttacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCACTGAAGTCTGTCAGATACATTCAGATTCAGAATGTGTCTGCTGTTGTGACGCTACTAAAGCTGTGATCCAATTGGTCATCTCTGCTTTGGTGGGCGTGGCTATTGTTGTAGTTTTGGGTTTCGAAATCACGTCCAGAAAAGCTGAACAGAAAAGACGAACTCCAGTTCTTCGCTGATTACAACCATCCCTTTTTGTACCCGTTTTTGCtcttctctttattttctttttgaaaatggTTGAAggaataaaagtgtttttatgcgCATtgatttttcaaatgatttgacATGTTTTGAATTAtacacccaaaaata
>XM_043222897.1
CCGCCGATAAAAGCTCAAACATGACCACTGTGGCCGCAGCAAGCATGTAGAGACTAAGGTGTCACATCCTGCTAGGCGAAGACCGCTCGCTTTGAGCGTTTTCATCGTGTTTCGAGCTGCTGATTGTTCTGGGAGCGGCTTGAAAATGGTTCCTgcgtttgttttgttctgtttgtctTTATCCGGGCTTGTCGGTGCCTTTGGTGTTGAGACGGATGAAATGAAGTCGGTGTCGGTGACGGAGGGAGACTCTGTCACTCTGCAGACcgatgctgaaataaaaaaagatgatctGATTCTGTGGAGATTCGGAGCCGAAGACTCTCCCTTGGCGGAAGTCAACAGATCGGCCCAGATCATCTCAGCATCTGAAAGCACCAAAGGATTCGAAGATAGGTTGCACTTGGACCCCCGGACTGGATCTCTCACCGTCAGGAACATCCGAACCGATCACTCTGGGATATTTAAAGCACAGATCATCAGAAATAAGATGATCAGGAAAGTGTTTAATGTCAGTGTTTATGCTCGTCTGTCTTATCCTGTCATCAGAAGAGACTGTTtctcttcatcatcttcatcatcttgtTCGTTGTTGTGTTCGGTGGTGAACGTGGaatatcaggataaaaacacttacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCACTGAAGTCTGTCAGATACATTCAGATTCAGAATGTGTCTGCTGTTGTGACGCTACTAAAGCTGTGATCCAATTGGTCATCTCTGCTTTGGTGGGCGTGGCTATTGTTGTAGTTTTGGGTTTCGAAATCACGTCCAGAAAAGCTGAACAGAAAAGACGAACTCCAGTTCTTCGCTGATTACAACCATCCCTTTTTGTACCCGTTTTTGCtcttctctttattttctttttgaaaatggTTGAAggaataaaagtgtttttatgcgCATtgatttttcaaatgatttgacATGTTTTGAATTAtacacccaaaaataa

Function

NR:

description
PREDICTED: titin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222894.1 False 1095 mRNA 0.44 4 3178999 3180902
XM_043222895.1 True 1099 mRNA 0.43 5 3175884 3180903
XM_043222896.1 False 1014 mRNA 0.43 4 3179035 3180903
XM_043222897.1 False 1005 mRNA 0.44 5 3178995 3180904

Neighbor

gene id symbol gene type direction distance location
LOC122327513 NA coding upstream 9063 3163691 ~ 3166821 (+)
cers1 cers1,LOC107702637,LOC107566364,LOC107698599,LOC107733357 coding upstream 95969 3066926 ~ 3079915 (+)
mydgf mydgf,LOC107727555,LOC107702644,LOC107733317,LOC107698601,LOC107549393,LOC566052,LOC107566370 coding upstream 123165 3049125 ~ 3052719 (+)
LOC122327553 mibp,LOC107566367,LOC107702642,LOC107727561,LOC107734093,LOC107698603,LOC107549391 coding upstream 131393 3041516 ~ 3044491 (+)
atcaya atcaya,LOC107698602,LOC107727562,LOC107702639,LOC108430235 coding upstream 135325 3035058 ~ 3040559 (+)
LOC122327485 LOC107718467,LOC107549388,LOC107698584,LOC107702645,LOC107566368 coding downstream 7498 3188402 ~ 3193102 (+)
zgc:171566 zgc:171566,LOC107718463,LOC107698580,LOC107549371,LOC107702651,LOC107712179,LOC108444051 coding downstream 12415 3193319 ~ 3196364 (+)
si:dkey-222f2.1 si:dkey-222f2.1,LOC107712176,LOC107694007,LOC107718458,LOC107698573 coding downstream 64736 3245640 ~ 3250629 (+)
LOC122327483 NA coding downstream 97277 3278181 ~ 3280208 (+)
zmp:0000000652 NA coding downstream 107016 3287920 ~ 3289605 (+)
G148926 NA non-coding upstream 72981 3102572 ~ 3102903 (+)
G148830 NA non-coding upstream 183472 2990285 ~ 2992412 (+)
LOC122327636 NA non-coding upstream 319800 2806603 ~ 2856084 (+)
G148781 fbn2b,ctxn1,LOC107549363,LOC107742800,LOC107704489,LOC108441290,LOC106573568 non-coding upstream 337935 2770775 ~ 2837949 (+)
G148742 NA non-coding upstream 656742 2518930 ~ 2519142 (+)
G148942 LOC107702631,LOC107698575,LOC107549383 non-coding downstream 2624 3183528 ~ 3189154 (+)
G148973 NA non-coding downstream 44305 3225209 ~ 3226579 (+)
G148975 NA non-coding downstream 46800 3227704 ~ 3228830 (+)
G148979 NA non-coding downstream 64237 3245141 ~ 3245582 (+)
G148968 NA non-coding downstream 74558 3255462 ~ 3257706 (+)
LOC122327293 myo9b,LOC107566354,LOC107702620,LOC107549373,LOC107698595,LOC107718479 other upstream 22303 3114201 ~ 3153581 (+)
loxl5a loxl5a,LOC107698563,LOC107549379,LOC107733348,LOC108430202,LOC105011451 other upstream 127752 3044638 ~ 3048132 (+)
LOC122327475 NA other upstream 212881 2959100 ~ 2963003 (+)
G148388 NA other upstream 1030324 2143885 ~ 2145560 (+)
LOC122327951 NA other upstream 1318742 1854867 ~ 1857142 (+)
tma7 NA other downstream 42713 3223617 ~ 3224491 (+)
dnase1l4.2 LOC107549369,LOC107718466,LOC107712178,LOC107698583,LOC107566352,LOC107702653 other downstream 48363 3229267 ~ 3238958 (+)
LOC122327575 NA other downstream 72834 3253738 ~ 3254861 (+)
LOC122327325 NA other downstream 116458 3297362 ~ 3592373 (+)
G149028 NA other downstream 390189 3571093 ~ 3574473 (+)

Expression


Co-expression Network