RNA id: XM_043222896.1


Basic Information

Item Value
RNA id XM_043222896.1
length 1014
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC122327489
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3175884 ~ 3180904 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGCATGTAGAGACTAAGGTGTCACATCCTGCTAGGCGAAGACCGCTCGCTTTGAGCGTTTTCATCGTGTTTCGAGCTGCTGATTGTTCTGGGAGCGGCTTGAAAATGGTGCCTTTGGTGTTGAGACGGATGAAATGAAGTCGGTGTCGGTGACGGAGGGAGACTCTGTCACTCTGCAGACcgatgctgaaataaaaaaagatgatctGATTCTGTGGAGATTCGGAGCCGAAGACTCTCCCTTGGCGGAAGTCAACAGATCGGCCCAGATCATCTCAGCATCTGAAAGCACCAAAGGATTCGAAGATAGGTTGCACTTGGACCCCCGGACTGGATCTCTCACCGTCAGGAACATCCGAACCGATCACTCTGGGATATTTAAAGCACAGATCATCAGAAATAAGATGATCAGGAAAGTGTTTAATGTCAGTGTTTATGCTCGTCTGTCTTATCCTGTCATCAGAAGAGACTGTTtctcttcatcatcttcatcatcttgtTCGTTGTTGTGTTCGGTGGTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcaacATCAGTCTCTCTTTACATCTGGAGGTGGaatatcaggataaaaacacttacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCACTGAAGTCTGTCAGATACATTCAGATTCAGAATGTGTCTGCTGTTGTGACGCTACTAAAGCTGTGATCCAATTGGTCATCTCTGCTTTGGTGGGCGTGGCTATTGTTGTAGTTTTGGGTTTCGAAATCACGTCCAGAAAAGCTGAACAGAAAAGACGAACTCCAGTTCTTCGCTGATTACAACCATCCCTTTTTGTACCCGTTTTTGCtcttctctttattttctttttgaaaatggTTGAAggaataaaagtgtttttatgcgCATtgatttttcaaatgatttgacATGTTTTGAATTAtacacccaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220266 lncRNA upstream 76132 3102572 ~ 3102903 (+) True G148926
TU220076 lncRNA upstream 186623 2990285 ~ 2992412 (+) True G148830
TU220073 lncRNA upstream 186623 2991299 ~ 2992412 (+) False G148830
TU220052 lncRNA upstream 218207 2959100 ~ 2960828 (+) False LOC122327475
XR_006247702.1 lncRNA upstream 322951 2806603 ~ 2856084 (+) True LOC122327636
TU220299 lncRNA downstream 2625 3183528 ~ 3189154 (+) True G148942
TU220336 lncRNA downstream 44306 3225209 ~ 3226579 (+) True G148973
TU220338 lncRNA downstream 46801 3227704 ~ 3228830 (+) True G148975
TU220339 lncRNA downstream 57620 3238523 ~ 3238938 (+) False dnase1l4.2
TU220346 lncRNA downstream 64238 3245141 ~ 3245582 (+) True G148979
XM_043222932.1 mRNA upstream 12214 3163691 ~ 3166821 (+) True LOC122327513
XM_043222931.1 mRNA upstream 12214 3163691 ~ 3166821 (+) False LOC122327513
XM_043222525.1 mRNA upstream 25454 3114205 ~ 3153581 (+) False LOC122327293
XM_043222888.1 mRNA downstream 7499 3188402 ~ 3193102 (+) False LOC122327485
XM_043222889.1 mRNA downstream 8985 3189888 ~ 3193102 (+) False LOC122327485
XM_043222887.1 mRNA downstream 9379 3190282 ~ 3193102 (+) True LOC122327485
XM_043222798.1 mRNA downstream 12416 3193319 ~ 3196364 (+) True zgc:171566
XM_043223028.1 mRNA downstream 42714 3223617 ~ 3224491 (+) True tma7
XR_006247629.1 other upstream 26470 3114202 ~ 3152565 (+) False LOC122327293
XR_006247630.1 other upstream 26599 3114202 ~ 3152436 (+) False LOC122327293
XR_006247636.1 other upstream 131259 3044638 ~ 3047776 (+) False loxl5a
TU219297 other upstream 1033475 2143885 ~ 2145560 (+) True G148388
unassigned_transcript_2538 other upstream 1048894 2130069 ~ 2130141 (+) True trnam-cau_117
TU220335 other downstream 42725 3223628 ~ 3224490 (+) False tma7
TU220341 other downstream 48364 3229267 ~ 3235787 (+) False dnase1l4.2
TU220342 other downstream 48364 3229267 ~ 3235787 (+) False dnase1l4.2
TU220340 other downstream 50645 3231548 ~ 3235787 (+) False dnase1l4.2
XR_006247633.1 other downstream 116459 3297362 ~ 3304754 (+) True LOC122327325

Expression Profile