RNA id: XM_043222931.1


Basic Information

Item Value
RNA id XM_043222931.1
length 1854
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC122327513
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3163691 ~ 3166821 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCATAAAACTTAACACGATCACTTCTAATTCCACAAAATGCAgccttgacctctgacctgttAGCAGCGCTTGTACAATCCAGGCGATCCAACGGTGGCTGCCTGGTGGGCATCTCGACATCTTTCCTTGATGAAGGACCAtcacctacagctcaacctggcAAAGATCGAGCTTCTTGTCTTCCTGGCCGCCTCAGCTCTACGGCACGACTTccccatccagctaggttcgtCTACAATTACCCCGTCAACTTCGATCAGAAAACCTGGTGTAGTCTTCGACGAGCGGCCGACCTTCAAAGAGCACgctgcaaagactgctcgatcttGGAGGTTTGCAGAAAGTTCAgaccctttctaacagagcgtGTTTTGTCATATATGtcttatatgcatataaaatcaTATACGCAGGTTAGTCTGCacttgaattttgaaaaatgtagtaaaaattCTCTAACACCATCTGTAAGTTAGTGAGTTATATGGCTGTGatatttaaactttaatgttTTGCATAAGGTGTACCAACATTTACAACTCCACATATATAAGAAGCCATATATAGATAAGGATTAAGGTCTTTTCCATGTCGTGCTCTTAAAATTTGCGTAAAGATGAACGTGTCATAGCTAACAAAGCATGATATGAAGAGCTCTCCTTAAGTTCTAGTTTTGCatgtcacaataaaaaaacgtgATCTAAATTCTGTGACATTAAGGTCTTGTCTGTGGTAGCACAGTTAAAGAGATAACAACCATTGGTCTTGTCTTCAATGGAGTAAGCTGTTCTATCGCTTACAAATTTTAAGCAAAACCCAGAACGTGTCTCCAGAACCCGGTCCACCCCTACATTTCTTTATAAGCGCATCAGGTCCTCCTGTTCAGCTTCATTCTTCACTTGCATCAACAGTAAGCTCTAAGAGTGTCTGTTTCCCAACTCTGTCGTGTAGTCGTCATCTTCTGCAGTCGTCTTCCACGATGAACGCGCTGCGGTCGCTCTTTGTTCTGTCGGTCTCCAGTCTGGTTTCAGGCAGGGTGGTGCCAAACCTTTTAACCCCTGCTCCTGGAGGATGCCCTGACTTCTTTCTGAACACTGCACTGGGTCGGGTCACTCCGACTAATCTTCCAGGAAATCAGTATGCAAGAATCTGTCAGGAATACGGGGGGATTGACAGATTTGCCACATATTATGATACCTTCTGGCACATTCCTGTTTGGACGGCATATAGGTTTATTGGACGGGGCGCGAACAACAGAACTGGATGGAGAACTGAAACTATGCTCGGTAACCAGCAGGCCACCAACGCGGATTATACTGCATTGGGAAGTAACTGGGACCGAGGTCATCTGTATCCTGTCCATCACACGTCTACTCCAGCAGACGCTGAGTCCACATTCACTCTCACTAATGCGGTGCCGCAGTTTTATTCTCTGAACAGAGGTCAGTGGAGGGTGCATGAAGAAAGAGTAGCTGGGCTTATGGATGACTGTTTAAACCAAGGTTACTCCGTGTATGCTGTGGTCGGGGCAGTACCAGATAATACACAAAATCAACCCAATCAACCTAATAATTTAAACACACCAAGCCACATATGGAGTAGTTTCTGTTGTAATGACAACAATAACATTGGCATACGTTCCTTGGGTTTTATTGCAGTGAACAAAGTGAATGTCGCTCCCAGTGAGTTGACGGTGAGCCAACTGGAGACTAACCTCACTAATCTTTATGGGTCTCAATTTAAAGTGTTTGGATAAATAGAGTTTGATTTTTATCGAAAAGCAGAAACTACTGTACGCTACCATATGCTATTGTAAGATGGTGTTTTATGATTGCCCATGAGGTAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220266 lncRNA upstream 60788 3102572 ~ 3102903 (+) True G148926
TU220076 lncRNA upstream 171279 2990285 ~ 2992412 (+) True G148830
TU220073 lncRNA upstream 171279 2991299 ~ 2992412 (+) False G148830
TU220052 lncRNA upstream 202863 2959100 ~ 2960828 (+) False LOC122327475
XR_006247702.1 lncRNA upstream 307607 2806603 ~ 2856084 (+) True LOC122327636
TU220299 lncRNA downstream 16707 3183528 ~ 3189154 (+) True G148942
TU220336 lncRNA downstream 58388 3225209 ~ 3226579 (+) True G148973
TU220338 lncRNA downstream 60883 3227704 ~ 3228830 (+) True G148975
TU220339 lncRNA downstream 71702 3238523 ~ 3238938 (+) False dnase1l4.2
TU220346 lncRNA downstream 78320 3245141 ~ 3245582 (+) True G148979
XM_043222526.1 mRNA upstream 10110 3114205 ~ 3153581 (+) False LOC122327293
XM_043222895.1 mRNA downstream 9063 3175884 ~ 3180903 (+) True LOC122327489
XM_043222897.1 mRNA downstream 12174 3178995 ~ 3180904 (+) False LOC122327489
XM_043222894.1 mRNA downstream 12178 3178999 ~ 3180902 (+) False LOC122327489
XM_043222896.1 mRNA downstream 12214 3179035 ~ 3180903 (+) False LOC122327489
XM_043222888.1 mRNA downstream 21581 3188402 ~ 3193102 (+) False LOC122327485
XR_006247629.1 other upstream 11126 3114202 ~ 3152565 (+) False LOC122327293
XR_006247630.1 other upstream 11255 3114202 ~ 3152436 (+) False LOC122327293
XR_006247636.1 other upstream 115915 3044638 ~ 3047776 (+) False loxl5a
TU219297 other upstream 1018131 2143885 ~ 2145560 (+) True G148388
unassigned_transcript_2538 other upstream 1033550 2130069 ~ 2130141 (+) True trnam-cau_117
TU220335 other downstream 56807 3223628 ~ 3224490 (+) False tma7
TU220341 other downstream 62446 3229267 ~ 3235787 (+) False dnase1l4.2
TU220342 other downstream 62446 3229267 ~ 3235787 (+) False dnase1l4.2
TU220340 other downstream 64727 3231548 ~ 3235787 (+) False dnase1l4.2
XR_006247633.1 other downstream 130541 3297362 ~ 3304754 (+) True LOC122327325

Expression Profile