RNA id: XM_043222526.1


Basic Information

Item Value
RNA id XM_043222526.1
length 7898
RNA type mRNA
GC content 0.50
exon number 42
gene id LOC122327293
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3114201 ~ 3153581 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCAAACGCTCTGTTTTGGCCGAACTAGCGCTTTGAGGAGCAGCGACCCTGCGGCCGGACTACTTTTTTCATCCGCGGGGTGTCGCTGTTCAGCATCTGTTCGCACGAGACAAGTTTTTCCTCACTGCGCGGTCGCACGGATCTCCGGCACAAAGCTCGCAGACCGCATTCACCGTGTCCGCGCGTCCTCTCCGGACTCGTATCCGCGCGCTATGTTTTTAAAGCGGCCCCGGGGGTGGAAATAAACCTGTCCGGATGAATCTGACGAAGAGGCGATCTCTCGGGTGAAGAGGCGGAGCCGCACACGCGTACGCGCAAACACACGGAGACAACCGAGCAGCTGCCGcgtttattaacttattaaacaTGAGAGGCTTCGTTCGGCGCACCACGCGCACACCACGGTGCTAGATGGTGGTTGTGAAGGCAGTGCGTAATGCTGAAGGGGCTCATCCTGAGTCAGAATGAGTGTCAAAGATGGCGATGGGACGACTAGCCAAGATGGAAAGGCCTACGAACTTCAGATCTACCCCCGACTCTCTCTGGAGACAGCCTCATGCTGTACACTCAGAGTCACCAAGGAGGCCACCGCAGCCAGCGTCATACGAGACGCGGCAGCGACCCTCGGACTGGATGCCAACAAGCTCTACGTCTTGGCCGAGGTGAAGGAGTGCGGTGGGGAGGAGTGGGTGCTAGAATCCACCGACCTTCCGGTGCACAGAGTCCTTCTCTGGCCGAGGAAAGCCCAAGAACAGCATTCTCAGAAAGAAGGATTTTACTTCCTCTTGCAGGAGCGCAACCGCGATGGCACCATCCGCTACGTCCACCTTCCTGCCGTGGGGAACGAGCAGGAGTCCAAGAGACTGGTTGCTCGGGGCTTCCTTCCACCCCAGCAGGAGGAGTTTGAGGACCTCTGCAACCTTCCGGTCCTTAGTGAGGACAGCATCTTGAGTAACCTCCGCATTCGCTTTCAGAAGAATAAAATTTACACATACGCTGGCAGCATCCTCGTTGCCATCAATCCCTTTAAGTTCTTACCTATTTACAACCCCAAATACGTCAAAATGTACGAGAACCACCAGTTGGGCAAGCTGGAACCTCATATTTTCGCCATTGCTGATGTAGCCTACTACGCCATGTTGCGCAAGCATGTCAACCAGTGCATCGTTATCTCAGGAGAGAGTGGATCAGGCAAAACACAAAGCACTAACTTCCTCATTCACTGCTTGACGGCTCTCAGCCAGAAGGGATACGCAAGCGGCGTGGAACGAACCATCTTGGGTGCTGGACCTGTGCTGGAGGCGTTTGGCAACGCAAAGACGGCCCACAACAACAACTCCAGCCGATTTGGGAAGTTCATCCAGGTTAATTACCTGGAGAGCGGCGTGGTGCGGGGGGCCGTGGTTGAGAAATATCTTCTGGAAAAGTCTCGTCTGGTGTCCAGAGAGAAGAACGAGAGGAACTACCACGTGTTTTACTATCTGCTGGTGGGTGCGTCGGAGGACGAGCGCCGCGaattcagactcctgcagccaGAAGAATACTTCTACCTCAAGCAGCAAAACTTTACGATAGAAGATGCGGACGATCTCCGGCACGATTTCGAGCGACTGCAGCAGGCGATGGAGATGGTTGGCTTCCTGCCGGCCACGAAGAGACAGATATTCTCCGTCCTGTCGGCCATCTTGTATCTGGGTAACGTGACGTACAGTCAGAAGTCGTCCGGCAGAGAGGAAGGTCTGGACGTGGGGCCGCCGGAGGTGCTCTCCACACTCTCAGACCTGCTGAAGGTTAAGGAGGAGCTGTTGGTGGAGGCTCTCACCAAGAGGAAAACAGTGACGGTTAACGACAAGCTGATTCTGCCCTACAGCCACAGCGAGGCCATCACCGCTCGAGACTCAATGGCCAAGTCTCTGTACAGCGCCCTGTTCGACTGGATCGTCCTCAGGATCAATCACGCGCTGCTGAATAAGAAAGACATGGAGGAGTCCGTCTCGtgtttgtcTATTGGTGTGCTGGATATCTTCGGCTTCGAAGACTTTGCGACCAACAGCTTTGAACAGTTCTGCATCAACTACGCCAACGAGCAGCTTCAGTATTACTTCAACCAGCACATCTTTAAACTTGAACAGGAGGAGTATCAGGCCGAGGGCATCACTTGGCACAACATCGACTACACCGATAACGTCGGCTGTATTCACCTCATCAGCAAGAAGCCCACTGGACTCCTCTATTTACTTGATGAGGAGAGCAATTTTCCTCACGCCACTGATAAAACCTTGCTGGCCAAGTTCAAACAGCAGCACCAACAGAATCATTACTTTGTGGCGACTCCAGTGTTGGAGCCGGCCTTCGTCATCCTCCATTTTGCTGGAAAGGTCAAATACCAgatcaagGATTTCCGTGAGAAGAACACGGATCACATGCGTCCGGATATCGTGGCTCTCTTGCGGAGCAGCGACCGAGCTTACGTCCGGCAACTGATCGGGATGGACCCGGTGGCCATGTTCCGGTGGGGAATCCTGCGCGCCACGGTGCGCGCTTTGGCCGCCTTCAACGAGGCCGGCCGCCGCTGGGCAGCCAAGACTGCGGGTGTGGTCAGACCAAACTCCAGAGTTCCTCTAGGAGAGCTGCAGAGATCCAACGTGCCCATCGAAAGGATGTACCGCCACGCTCCTATGCTTGATTTCTCCTTTGATCATTCAGAGGAGCGCCCTCTAGAGGCTTTTGAGGACATCTTTGCTAGTTATGAGAGTAAGAAGAAAAACAAGAACCCCAAGACCAAGCAACTTATTCCCAAGAACCTGTTGGACTCTCATTCGTTGAAGTTTATAGTGGGCCTTCATGACCGCACCACCAAGTCTTTACTTCATCTGCACAAGAAGAAACGTCCTCCCAGCATCAGTGCCCAGTTTCAAACCTCTCTTAGTAAGCTTCTGGAAACATTGGGGAAGGCAGAACCATTTTTCATCCGATGCCTCCGTTCTAATGCTGAGAAGaaagaaatgtgttttgatgaaGCACTCATTGTGCAGCAGCTGCGGTACACAGGCATGTTGGAAACGGTGCGCATCAGGCGGTCAGGTTATGGGGCCAAATACACCTTTCAGGAATTTACTGAGCAGTTTCGTGTGTTGCTGCCAAAGAACGCTACGTCCGTGGAGGACATATCATCTCTATTGCACAGACTTGGTTTTGACCACACTACCTACCAGATTGGAAGAACTAAGGTGTATCTCAAAGAGCTTGAAAGGCAAAAGCTTCAGGACATCCTTCACAAAGATGTCATGCGCAAAATCATTTTCTTGCAGCGCTGGTTTAGAGCCAAAATGCAGAGGATGGAGTTTATTAGAATGAGAGAGGCAGCCATCTTAATCCAGCGCTCATGGCGCAGCTACCGCAAAGAGAAGTTTTACCAAGCAGCGGTTCTGATTCAGACAGCATGGCGAGGTTCCAAACAGAGAGCTAAATATCGAAAAACGCAAGAATCTGTCACAAAGATACAGGCATTTGCAAGAGGGCATTCGGCTCGCAAACGGTACCACTCTTTAAAGGAAGATAAGaggaaaaaagaggaagaggaagctcagagaagaaaagaggaggaggaggaggaagcagCTCGGCAAGCCAAGGAGGCAGAAGAGACTGCTATGCGAGCTAAAGAGGCTGAGGAAATGGCCAGACGAATCAAAGAGGAAGCAGAGGCAGCCAGGCGTGCCAGGGAGGTAGAGGAAGCTgctaaaagacagaaagaacaAGAGGAAGAGGCGGCTCGGCTTGTTTTAGAGGCTGAGCAGAAGGCTGCAGAGCAGCAGGAGAAGATGCCACTACATCAGCCAACGACACCAGGCAAGCAGTCTAATGAAGTGGAGACAGAAATGCTGGAGCGCCCTAAGGCCCCTGTGGATGTTGAGATTCAAAGTAAGGGCAGGGCCCATGTTGATGTCTCAAAAGACCAAAACCATTCTGAGAAGTTTCCTCAAGTGGAGGCTGGTCCTCACCCTGACGTTATGGAACACCAGAAGCAAAAGGAAAATGGATCTTCTCCACACCACAGAGAAGACGGTACACAAGCTAAACCCATTTCTCCTGAAATCCCAATCGGACAAAGCCAAAACAGAGCTCCTTCGCTATCCAAACTTCCAGCATCCAGAAGCCAGGAGAAACGGGAGCTTAGGAGACAACGTGGCTTAGAGCACAACCAGAGAGAAAGTGAGCGGGCAGCTTCGGTTGGAAAAGACGATACTTTGGTCAAGAGCAAAACTCTTGAGAGTCCAGGAAAAGCAGACAACAAGCTGAAGGAACGCTCTGACAGCAAAGAATTGGATCAGTACACCTTTGTGGCTTGGAAAGTAGACAAGACGAAGAGGGATGCCAAAGAAGTCACTGAACTTGTCCGACCTTCCACCTTATCCTTAGATATCCCTACTTCTGGGCCTGGAAGAAATGGCTACACTGACCCGTCCATTACTGTTCAACCTGCTCTTGCCAAAGAAGGGGCCAACAGGAAAAAGGAACCATCGAGAAGCAACACTCAACCAGAAAACTTCATCGCGGGACCCCGCAGTCTGGAGGACAGGAATAGCAAAACTCTCCAGAATCGTGGGATCTCTATGTCACTAGATGATGTATCCAAAATAGGTTTGGGCATTTCATCACAGGGCAAAACTCATCAAAGACGCAGGCCATGGCTCGCCTTGTCTCGTATATGTTTGCCCATTAAAAGTGTTGAAATGGAGGATGCAGAGTACTGGACTTTTCCTTTTCCCCCCATGAGTCCATTCAAGACACAGTCCAGCACTGAAGTTGGTCCTGATAGAGTGAAGGCCAGCACATTGAAGGAAAAAGTTCATGACAGCCATAGCCTTCAAGATGTATCACCTGTCCAGCCATCTACTCCAGAGAGgaCAACAGGGTTTTTCAGAAAGATTCTCAAGAAGCGTCCACACAAAGAAGCTCAGACCCCGGAAGATGGAGATCTGAGCCTAGCTTCCTATTTGGATCAAAAAGAAGCCACTTCCCAATCACGCTTACACAATTCAAAGCCTAATGCGAGTCGACCCTCTCGGACTACCAGCATCATGATCAGTCACTCAACAACTCGGGCCTCTGAGCAGTGTAACTCTTCACTCAACCGCGTGATCACCAATGCAAATGAGCTACGTCATCTTGATGAGTTCCTGGGCAATCAGGTGAATGATTTGCGCTCACGGGGAAAGCAGCTTTCAGGAACAGAGCACATCTTTATTACTGCCACTATGCAGTTCAGAGAAAACATCAAGGGGATGTACTCATTCTCTAAACCTCAAATTGGGTATAAGGCTTTGATGAATAGCTACCACAAAAAAGTGATCAGTCTAGCAGGAGAAAAGCAGAAAGGTGAAGTACCACTGGTAGTTAACCTCTTCCAGTCTGTTCTGGATGGCTTCATCAGAGCAGAGATTAAAAAAGAAGAGGCTGAACCAGCCAAGCCCCCCAAAGGTCGTAAGATGAGAAGGAAGAAGGATAAGAGTTTGGAGAATCCATTGGACCACGTGTTTACACACTATCAAGTCAACATCATGCAGTCTTGTGATCAGTGCACATCCTACATCTGGGGAATGGAGAAGGCCTACATGTGCAGTTattGCAAAATGGTTTGCCATAAGAAGTGCATTTGTAAAATTGTCATAGACTGCTCTACTTTCTGCTCCAAGAAGTGTGATGATGAGCCTGGATCACAACACTTTGGTGTGCGCGTTTGCAACCTGGTTAACAACAAGACCCCTGTGCCAATTGTCCTGGAGATAATGCTGGAACATGTGGAAATGAATGGGCTGTACACAGAGGGCATTTACAGGAAGTCCGGCTCAGCCAATCGCATGAAGGAGCTACACCAGCTGTTGGAAGCAGGCCCAGAGAATGTTTGTCTTGAGGATTACCCCATCCATGCCGTCACTGGCCTGGTCAAACAGTGGCTCAGAGAGTTGCCTGAACCTCTCATGACCTTCACGCACTACAACGACTTCCTCCGTGCCATAGAACTTCCTGAGAAGCAAGAACAATTGCAAGCCATTTACAAAGTTTTGGAACAGCTTCCAACAGCCAACTTCAACACCTTAGAGAGGCTTGTTTTCCATCTTGTCAGGGTTGCAAAAGAGGAGAAAAGCAATCGAATGACGCAGAACTCTCTGGCCATTGTTTTTGCTCCCTGCATTCTCCGCTGTCCGGACAGCGCTGATCCTCTCATGAGCATGAAGGACGTCGCCAAAACCACCATTTGTGTGGAGATGCTACTTAACGAACAAATCCGGAGATACAATGAGAAAATGGAGGAGATTGAGCAGCTGGAATATGCTGAGGCACTGGCTGTCAATCAGCTCAAGCTAAAAAGACAAAACACGTGCTGGCATTTACCTCTCAGATTTATCACTCCTTACAAAGAAGTGGCGGTTCGGGAGAAGCCAGCTTCCGACCTTTGTGTTGTACCTGAGAACGAACCCCTGGATTCAGACACAGAAGCTGAGCGAAGCTTGATGGAGCGAATCAAGTCTATCAAGCAGGAGAAAGAGGACCTTGCTTGCAGGCTACCAGAACTAGAACAGCCTGGTTCTGATCAGGAGAATCTTGACTCGGAGGCGTCTGTGAGCTCTGAGAGCCTGTTGGATGAGCGAGCGGTCTGTTCCGACACGGAAGGACAAAAAATCGTACTGCCAAGATTATCCAAACCAGCTTGTCTTCCTAAGTCTGTCACCCTGGCCCAAGGAGGCAGCACATGGGCTGACAGCCCCTCTCTTCCTTCACTGTCTTCTCCCAGGCTTCAGCTCCAGCGTCGCCACCCTATCATCCCCAAAACGGTCAAGCTCCCTTCAGGAGTCCTGTGCCACGCAGCTGTACAGTCCCTCCCTCCCCGCAAAGCCCAGTCCCTCACCCTCGTCCAGCGGCGCGAGCAACCCGGCCGGCGCAAAGACAGCATCCAGTCCCTCTACATCACTGCTGGAACCGAGCTCCTCTTCGCTCCCTCACCTACAATCTCAGGTGCCTCCAGCGCACAAGAGCTCCAGACCTCCCGACGTTTCTCGGACCCGGACATTGCTTTAGTAAAGGACGAGGTTTGAGTTGCAAAGCTCCCAGCTCtcgaaaagaaagaaatctggTGCTGACTGCTTGTCCCCCCCCTGGTTGTAGTGACTGATAAAGAGAATTGTCTCACCTAGCACTTTTCCatactaataatatattggatttttaaagagactttTTAAGACTCTGATCTGTGCTGCATATAGGCATTGGTATGCGTCAATGCTtgatgcttgatttttttttttttttttacttttttagtcTTGCACCTTTTGTGTCTTTAACGAACAGGAAAAGACTAATTCAACCATGAGGAGTGATACCTTGATCTTTTGTGGACTGATTTATTTGTACTTAAATCTAAATAGACTTTTAAGCTGTAGACCCTCCTTTTAATTTCTGCACAAGAACACAATGGACAAGTTTTGACTAGAAGAGGGAAGGATGCAGCACTTGCCACTTTCCTCTTGGACCAGAATGCCATAACCCAATGCAATTTTCCAGAATAACTCCTTTTCTTCTCGATAAGCGATGACACTTTGGATCTGTGTGGATGTCTATTCAGAATAGCTTTGTGTAGGACTAAATACAGTTTAGTGGCCAAGCCATTGTGTTTAATACTAAAGTCAAGAGTTATGAATGTTGTTGAATGTTGAATGAAAAGTATGGATCGAATGCCGGCTGGATGTCTAcgatgtaaattacattttgcatcatGAGGACTGTATGTGCCTACTAGTATCGCTGTTTTTGAGTCCTCagtgacatttttgcatttaatggaGAAACGACTAATTATTTTCCTACAATACAGTTTGTACTGGCCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220266 lncRNA upstream 11302 3102572 ~ 3102903 (+) True G148926
TU220076 lncRNA upstream 121793 2990285 ~ 2992412 (+) True G148830
TU220073 lncRNA upstream 121793 2991299 ~ 2992412 (+) False G148830
TU220052 lncRNA upstream 153377 2959100 ~ 2960828 (+) False LOC122327475
XR_006247702.1 lncRNA upstream 258121 2806603 ~ 2856084 (+) True LOC122327636
TU220299 lncRNA downstream 29947 3183528 ~ 3189154 (+) True G148942
TU220336 lncRNA downstream 71628 3225209 ~ 3226579 (+) True G148973
TU220338 lncRNA downstream 74123 3227704 ~ 3228830 (+) True G148975
TU220339 lncRNA downstream 84942 3238523 ~ 3238938 (+) False dnase1l4.2
TU220346 lncRNA downstream 91560 3245141 ~ 3245582 (+) True G148979
XM_043222752.1 mRNA upstream 34290 3066926 ~ 3079915 (+) False cers1
XM_043222751.1 mRNA upstream 34290 3066927 ~ 3079915 (+) True cers1
XM_043223008.1 mRNA upstream 61486 3049125 ~ 3052719 (+) True mydgf
XM_043222643.1 mRNA upstream 66073 3044638 ~ 3048132 (+) True loxl5a
XM_043222932.1 mRNA downstream 10110 3163691 ~ 3166821 (+) True LOC122327513
XM_043222931.1 mRNA downstream 10110 3163691 ~ 3166821 (+) False LOC122327513
XM_043222895.1 mRNA downstream 22303 3175884 ~ 3180903 (+) True LOC122327489
XM_043222897.1 mRNA downstream 25414 3178995 ~ 3180904 (+) False LOC122327489
XM_043222894.1 mRNA downstream 25418 3178999 ~ 3180902 (+) False LOC122327489
XR_006247636.1 other upstream 66429 3044638 ~ 3047776 (+) False loxl5a
TU219297 other upstream 968645 2143885 ~ 2145560 (+) True G148388
unassigned_transcript_2538 other upstream 984064 2130069 ~ 2130141 (+) True trnam-cau_117
TU219247 other upstream 1257070 1854873 ~ 1857135 (+) False LOC122327951
XR_006247737.1 other upstream 1475199 1626562 ~ 1639006 (+) False LOC122327950
TU220335 other downstream 70047 3223628 ~ 3224490 (+) False tma7
TU220341 other downstream 75686 3229267 ~ 3235787 (+) False dnase1l4.2
TU220342 other downstream 75686 3229267 ~ 3235787 (+) False dnase1l4.2
TU220340 other downstream 77967 3231548 ~ 3235787 (+) False dnase1l4.2
XR_006247633.1 other downstream 143781 3297362 ~ 3304754 (+) True LOC122327325