RNA id: XM_043222644.1


Basic Information

Item Value
RNA id XM_043222644.1
length 859
RNA type mRNA
GC content 0.40
exon number 5
gene id loxl5a
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3044638 ~ 3048132 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAGAGTGAGAGACCTTGATTACAGAGTGCTGCTCAGATTTCCTCAGAGGGTCAAAAATCAAGGCACTGCAGATTTTCTCCCTGTGAAACCACATCATCAATGGGAATGGCACAGCTGCCATCAGTAGGTTTCTGACAATTTATGTTCCACAACATCCACACATCAGTATTCACCTCGTTTCTACAGAAAAATAGAAGAAAGGACATTATCACAGCATGGATGCCTTCAGCGACTACGACCTCCTGGATGCCTCCACGGGCAGAAAGGTGGCTGAGGGACATAAAGCCAGTTTCTGTCTGGAGGACACCAGCTGCGATCCAGGTGTGAGGAGAAGATACGCCTGCACAGCTCACACACAGGGATTGGGCCCAGGCTGCTATGACACCTACCATGCCAACATCGACTGCCAGTGGATTGATATTACAGATGTTTCTCCTggagattatattttaaaaGTAACCGTGAACCCAGGTTTCCAGGTTCAAGAGTCTGACTTCTCAAATAACGTTGTTAGATGCGACATCAGATACACAGGGACGTACGTTCAAGCAAGTAACTGCAGAATCACAGGatAATGATCCAGTTTGCATCATTCAAACTTCCAGTGGTGAAATCATCCAAACATGTCTTTGTAGATTAGGTATAATTCGACTTATTTTCTCAGTGACTGTGACATATTTAGTAAAGCTAAAATAAGTTCCAATAATGGTATACAATGAATATTTGTTAATACCTTTTGTAATATAAGGAAATATTCAATTACATAttctatttattgtatttatttaatgctgtaATTTGGTGTAACCTTTGGTGCTAAAGTTTCAGTAAAACTCaagtaaatatatgtatgttttg

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005507 copper ion binding molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220076 lncRNA upstream 54523 2990285 ~ 2992412 (+) True G148830
TU220073 lncRNA upstream 54523 2991299 ~ 2992412 (+) False G148830
TU220052 lncRNA upstream 86107 2959100 ~ 2960828 (+) False LOC122327475
XR_006247702.1 lncRNA upstream 190851 2806603 ~ 2856084 (+) True LOC122327636
TU220010 lncRNA upstream 218104 2770775 ~ 2828831 (+) False G148781
TU220266 lncRNA downstream 54440 3102572 ~ 3102903 (+) True G148926
TU220299 lncRNA downstream 135396 3183528 ~ 3189154 (+) True G148942
TU220336 lncRNA downstream 177077 3225209 ~ 3226579 (+) True G148973
TU220338 lncRNA downstream 179572 3227704 ~ 3228830 (+) True G148975
TU220339 lncRNA downstream 190391 3238523 ~ 3238938 (+) False dnase1l4.2
XM_043222998.1 mRNA upstream 2444 3041516 ~ 3044491 (+) True LOC122327553
XM_043222999.1 mRNA upstream 2444 3041521 ~ 3044491 (+) False LOC122327553
XM_043222739.1 mRNA upstream 6376 3035058 ~ 3040559 (+) True atcaya
XM_043222740.1 mRNA upstream 6376 3036668 ~ 3040559 (+) False atcaya
XM_043222617.1 mRNA upstream 69353 2973337 ~ 2977582 (+) True c22h19orf44
XM_043223008.1 mRNA downstream 993 3049125 ~ 3052719 (+) True mydgf
XM_043222752.1 mRNA downstream 18794 3066926 ~ 3079915 (+) False cers1
XM_043222751.1 mRNA downstream 18795 3066927 ~ 3079915 (+) True cers1
XM_043222531.1 mRNA downstream 66069 3114201 ~ 3152625 (+) False LOC122327293
XM_043222533.1 mRNA downstream 66069 3114201 ~ 3152502 (+) False LOC122327293
TU219297 other upstream 901375 2143885 ~ 2145560 (+) True G148388
unassigned_transcript_2538 other upstream 916794 2130069 ~ 2130141 (+) True trnam-cau_117
TU219247 other upstream 1189800 1854873 ~ 1857135 (+) False LOC122327951
XR_006247737.1 other upstream 1407929 1626562 ~ 1639006 (+) False LOC122327950
TU219153 other upstream 1421745 1624472 ~ 1625190 (+) True G148295
XR_006247629.1 other downstream 66070 3114202 ~ 3152565 (+) False LOC122327293
XR_006247630.1 other downstream 66070 3114202 ~ 3152436 (+) False LOC122327293
TU220335 other downstream 175496 3223628 ~ 3224490 (+) False tma7
TU220341 other downstream 181135 3229267 ~ 3235787 (+) False dnase1l4.2
TU220342 other downstream 181135 3229267 ~ 3235787 (+) False dnase1l4.2

Expression Profile