RNA id: XM_043222999.1


Basic Information

Item Value
RNA id XM_043222999.1
length 987
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC122327553
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3041516 ~ 3044491 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTCTCATAACGCGCTGGTGTCTACAGAGATAAGACTGCGAGTTTAGCTTTAAGCGGAAGTTATCaataatacgtttttgtttttgtccttttgcgGCTTCTAATTTGTAAAACCTCAATCAGGTCGGATAAAATGAAGTGCATCATTGGAATAGGGGGTGTGACTAATGGTGGTAAAACCACCCTGACGAACAGGTTAATAAAAGCCTTACCAAACTGCTGTGTGGTTCACCAGGATGACTTCTTCAAGTGATCACCGCTTTGGACATGGAGGCCATGGTGAACACGGTCAAGGGCTGGATTGAAAACCCGATCAAATTCGCCCGTTCCCACGGCGTGCAAGTGACCCCAGGCGCGGAAATGGACGACCTCGAGAGCCAAGTGCACATACTCATCGTAGAAGGATTTCTGCTGTACAACTACAAGCCTTTGCTGGAATTCTTTGACAAATCGTATTACATAACCATCCCGTACGAGGAGTGCAAGTTGAGAAGAAGtacAAGGCAATACACCGTCCCCGACCCTCCCGGGCTCTTTGACGGTCACGTGTGGCCCATGTACCTCAAACACAGAAGTGACATGGATGGCACTCTGCAGATTGAATACTTGAACGGCTTGAAAACGAAAGATGAAATTTACAACCAGGTTTATGAAGACATCCACAACACACTCCTCAATCGTTTATAGCAGGAGGAGGTTGCTGCCAACCATTTGTACAATATTGTAAATAGGGATTTTACCTGCGGCCTTTTTTAACATGTCATTTTGTAAATAGTTTGACTGGAATGTAACTTAAATACCTGTGGAGAAACGTTcttgcatttaatatttgagGACCATGTTTTGAGGTTaaagttttttgggggggggtttcAAAGCAATCATTTGTGACCTCCTCATTCTGGAAATAGTTTGTTTACTACACAATGATTTTCTGAAATTTAGTTTGTACTTGTGTACCAATAAACATTGTGCTTTGACTTTTA

Function

GO:

id name namespace
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0050262 ribosylnicotinamide kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220076 lncRNA upstream 49109 2990285 ~ 2992412 (+) True G148830
TU220073 lncRNA upstream 49109 2991299 ~ 2992412 (+) False G148830
TU220052 lncRNA upstream 80693 2959100 ~ 2960828 (+) False LOC122327475
XR_006247702.1 lncRNA upstream 185437 2806603 ~ 2856084 (+) True LOC122327636
TU220010 lncRNA upstream 212690 2770775 ~ 2828831 (+) False G148781
TU220266 lncRNA downstream 58081 3102572 ~ 3102903 (+) True G148926
TU220299 lncRNA downstream 139037 3183528 ~ 3189154 (+) True G148942
TU220336 lncRNA downstream 180718 3225209 ~ 3226579 (+) True G148973
TU220338 lncRNA downstream 183213 3227704 ~ 3228830 (+) True G148975
TU220339 lncRNA downstream 194032 3238523 ~ 3238938 (+) False dnase1l4.2
XM_043222739.1 mRNA upstream 962 3035058 ~ 3040559 (+) True atcaya
XM_043222740.1 mRNA upstream 962 3036668 ~ 3040559 (+) False atcaya
XM_043222618.1 mRNA upstream 63939 2968495 ~ 2977582 (+) False c22h19orf44
XM_043222643.1 mRNA downstream 147 3044638 ~ 3048132 (+) True loxl5a
XM_043222644.1 mRNA downstream 2444 3046935 ~ 3048132 (+) False loxl5a
XM_043223008.1 mRNA downstream 4634 3049125 ~ 3052719 (+) True mydgf
XM_043222752.1 mRNA downstream 22435 3066926 ~ 3079915 (+) False cers1
XM_043222751.1 mRNA downstream 22436 3066927 ~ 3079915 (+) True cers1
TU219297 other upstream 895961 2143885 ~ 2145560 (+) True G148388
unassigned_transcript_2538 other upstream 911380 2130069 ~ 2130141 (+) True trnam-cau_117
TU219247 other upstream 1184386 1854873 ~ 1857135 (+) False LOC122327951
XR_006247737.1 other upstream 1402515 1626562 ~ 1639006 (+) False LOC122327950
TU219153 other upstream 1416331 1624472 ~ 1625190 (+) True G148295
XR_006247636.1 other downstream 147 3044638 ~ 3047776 (+) False loxl5a
XR_006247629.1 other downstream 69711 3114202 ~ 3152565 (+) False LOC122327293
XR_006247630.1 other downstream 69711 3114202 ~ 3152436 (+) False LOC122327293
TU220335 other downstream 179137 3223628 ~ 3224490 (+) False tma7
TU220341 other downstream 184776 3229267 ~ 3235787 (+) False dnase1l4.2

Expression Profile