RNA id: TU220010


Basic Information

Item Value
RNA id TU220010
length 4282
lncRNA type sense_over
GC content 0.47
exon number 7
gene id G148781
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2770775 ~ 2837949 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGAACGCGCCCAAGTTTCGCGGCGGACGCGGACGCGCGGCTCTCCTCGCAAATCGCTCTCGGTACCGAACAGGGTGAAGTACCACCGACCAGAGGCCGAGGCGTCGTTTCTGTCACTCTGTGCCGTCCGCCTACGTCCCATCTCTGCCCTGAAATGCACGCTGTACCAGACATTAGCCAGCCTCGATCGATAGCACCAACCCTACGAGACGCTTCTGCGTGAGAGAACGCAACGGATCATCTGTGAGTCACCCACCTAATCTAACGCACTCGAACGAACGGCTTTCCCGGCGTATCGATCCGAGCGGATTAGTCGTCCGATGCTCATTGTCTGAGGCTTTCAGCGGCGGCCAGAAATGGGATGCTCGCCGTGGGGCGATCAGTAAACTGGCACCCAACGTAGGGACAACACCTGCAAACCGCGTCCCATCTGGAACCAATTATCCTCATCCCCGCAGCCAAAAGAAACGAGCGCGTGACTCGAGCCCTTGCCGTTTTTATCCGCTGTGGCAGCCCGTTGAGTCTCGTCCCGTCGGCTCGCGCCGCGCCACTTGCGGGTCAGATCCGACTTGACAGGTCTAGGAATAAAAAAGGCTGTCATTCTGACCCCCGGTGGTGCCGGATTGCTCCACTTGTGTCACTTTGCGTGTCCGTCACGCGGTCGAAAGCGTCGACTTTGGCCTGGTTTGTCCACACCGGGGTCGCCGCACCGATCTGGCCAATCTCTCCGCCCGAGCCTCTCTCACGACAGCCTGCAAGTTCTGCCGCCGCCTCCCCTGGAGGATGAGCGATGTGTCCACGCTGGACTATGAGCTGCTCTCGCCGGGGCCGTCGTTCGCCGGGGTCCCCAGCAGCCCACCTCTTGGCGGCGACGCCGAGCAAAGGACGGCCTTCGCGTTCGTGGGGCTCCTGATGCTGTTTTTGATATTCCTGTTGGTGCGTTGCTTCCGGATCTTGCTGGACCCGTACAGCCGAATGCCCGCTTCGTCTTGGACCGATCACAAGGAGGGTTTCGAGCGGGGCCAGTTCGACTACGCCCTGGTGTAGTCACGTGACCTCGGGAAGCCGCCTGCCTTAGCCCAACTTGCGGCCTGACTCCAACCCTGTAGCTAAAGGTCATTGCACAAATTTTGGCGTAAATTTTCGCATGttaagaaacacaaaaacacaaagcactGTATATAGATCCTAGCACACCGAATCGGTCTTCTTTTTAATATGTGGCTCTAGTATCGCTAGCAAAGCATTAAACTGAGCTTCTGACATAACAAAGTAAACTTTGAATTGCTGTGATTAACCCCAACGGtccttaaagggttagttcaccccaaaatgaaaatccagTCCAAACCCGTAAggccttcgttcatcttcggtACACATGAAATCAGAAATCAGACGTTCCTTAAACGTTAACACAACTGAAATTTTCacaggtccagaaacgtagcaTTAGTAAATACATGGTAAAATATGACATCAGTggatcaaaaaacaaaaatgacaatttactCAACCTTTTTTCCCCAGAGTTGTGTCTTCTGCTGTTTTGAAATACATTAAGTAATCTCCAAAATGGCAGAggatgtaaattattttttattctttgcgcaaaaaagtattcttataGCAGCTTCACAAACCTGAAGTTGATCCACTgttgtcacatggactgttttaccgatgtgtttactatgtttctggacctgggatcgtttcagttgtgttgctgtctatggagggtcagatggctctctgatttcatcaaaaatgtcttaatttgagTTTTAAAGATAAaggaaggtcttacgggtttggaacgattAATGACTGgattgtcattttggggtgaactctCAGTTCCTCTATATCTCATATATATcccaatgtaaatgtatttttctttttaagaagcgagaagataaaatcataaatcatcCTTACTGCTTTAAGACTCCATTTAGTactattttgcttttttttaaatttttttttttcgcaatgtataaattactacaCAGCGCACAAGGTTTTTGTGCGTGACAAATTTTTAGGAgaacaaatacaacaaaaaaaaaaaaattttgcagTGACCTTAATTGCGCTTAAACCATcacgggttcgattcccaggggAACGCACGTGCCATGTATACCTTGGAAAGTACTTTGGGCGTGAAGAATTAACAGGGTCGACCATTTTTTCCGCTGTAGCTACTTCCTCAGGACGGTCTACAAGGTCTACTACGAATAAACGCATGAAGTCGTGAAGTCTCCAGTTCAAGGTGCCCAACACAATGCTCACTGTGAACTATTACCACCCTTCGGCTACTGTACATACTTCATTGTTACTGTAGATATATCTCAATTGTAAAAGACTTGAGGAAGTTCTTCAATGGACCCACGTAGATGGCATATTTAATTTAACGCAACGGAAAACGAGGGTGTGATGGACAGGTGTGAGCGAGTCTGGGACACTAGAAACATgggtttacaaaaaaaaaggtaaaatggaTTACAATTTGCGAAAAAACAAGACGATAACTTGACCTAGAAACTGTTTAGCTGTTAATTTGTTGCATTGAAtgtaattgatgtttttattaatgatttatacCATAAAAAAACGGTCAGGAAATTGTCGTTTTACGTTGGATGTTACATTGAATGCAACAAAtgcttttaacaatttaaaccATAAAATTCGGCAAACTCACGAAATTGTCGCTTTGCGTTAAATGCTGTAGTAAATGCATCACATGGTTCACACAAAGTTCACGCTTTAAAATCAGTAAACGCTCACTGAATGGTCACTTTGTTCATTTTGGCATTTACTGCAGCAAACGGTGAAAACGAAAAATCACAAAACCGGCGAGATCGAACGAACGGTTTACAAAAATGACACCGTAAACGTAGCTGGGCTGTCATTAAACTGTTGCTTTGGATTTAACGAATTTTGAAagcaattaactttttttttttctgcttagtCATTGCTGCCCTCGTTTTCTTGTGTGTCAAATTAAAGCCACCACCCATTCAGTACGATTTCTGTCTATCTAGCATGGCAATTTTGCGCAAAATACGACTTTTAAAGATAACTTCAGTATTGTTGGAAAGCCCGAGGATGTCCTACATACCTGCTGCCTTCGACAGACTCGTTCTCAACTCTGTGCTTTATACGTTTCTGAGGATGTTCTAGATTCGGAGCAAAAATCCCTTTAAGACTTTAAAAACCGAGTGTCAGTCCTTGTATTATTGCCGTCTGACTCTTTCCTGTCCTGTGACTATGTGTATATAAGCCATATGTTCTCATATCTCGAGGGTGTTCATGTCATTGGTTGTCTGTTTGCTAATCTGCCGAGCTCTCTGAAACCATTGTGATCTAAGAGAGGTTTAGAATCGACCgaaagctttatttttgtatcCCCACTCAGATTTGGAGTTCCCTTTTTGCTAACGTGTCGTCTTGAATTTGTAGCTCTCATTTGGACGGATGCGCAAGGAATGTCGACGTGCCAAGAAACAGAGGAGCTTGCATTTGCTTTGATGACGGTGATGGGATTGGGTCGGAAACCCTCTCCTCCGGGACACAGCGTCTTGTACTCAGCTGTGAGGAGACACAGGGATCATCAGTACAGCTTTCTGCCCGTGATTCCTGGCCCCTGAGAAAGGTGTAGTTCGTACTGGAGTTGATGGGCGGGCAGAGTTCGCAGGGGTTGCCCCAGGCTCCGCCCAGCGAGCAGCAGCAGGACGCGCGGGTCACGCCCACCCCGATCTCAGCGCTGCAGGAGATGCCCCCGTCGCCGCGGTCCAGCGTGTCCAGGAAGCAGTTCCCCACCCGCGTGTCTGACAGAGAACGGAGGGAAGCCGCGTTACGATCACAGTGAAGGCCGCGAGCGAATCAGAGCGAAAGGGCCGGGGCCCTTACCCACACAGCCCACCCCCGACGGGTTCAGCTCGAAGTCCGGCGGGCAGTTGCACAGTTTCCTCCGCTGCGGTCCAGCTCGTAGCCGTAGTCGCAGACGCAGCGAAACATTCCCGGCAGGTTCTGACACGATCCGAACACGCAGATGTTCTGGAAGTTACACTCGTCGATGTCTggacgacacacacacagcggatcgaATGGTATTGGTGGAGTCCAGTTTGCTACCGTGGGAACACTCGCAATTGAAGGAACCAGCTATGTTGCGGCACACGCCATTGATGCAGGGGTTGGAGTCGCATTCGTTGATGTCTGAACAAAAGAACGAAAGATGCGTCTATGAGAAAATAAACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219958 lncRNA upstream 251633 2518930 ~ 2519142 (+) True G148742
TU219424 lncRNA upstream 430364 2338819 ~ 2340411 (+) True G148452
TU219335 lncRNA upstream 617599 2151775 ~ 2153176 (+) True G148406
TU219327 lncRNA upstream 626703 2143101 ~ 2144072 (+) True G148403
TU220052 lncRNA downstream 130269 2959100 ~ 2960828 (+) False LOC122327475
TU220076 lncRNA downstream 161454 2990285 ~ 2992412 (+) True G148830
TU220073 lncRNA downstream 162468 2991299 ~ 2992412 (+) False G148830
TU220266 lncRNA downstream 273741 3102572 ~ 3102903 (+) True G148926
TU220299 lncRNA downstream 354697 3183528 ~ 3189154 (+) True G148942
XM_043223804.1 mRNA upstream 11338 2752641 ~ 2759437 (+) False timm44
XM_043223803.1 mRNA upstream 11338 2752944 ~ 2759437 (+) True timm44
XM_043223906.1 mRNA upstream 18523 2749251 ~ 2752252 (+) False ticam1
XM_043223945.1 mRNA downstream 39257 2868088 ~ 2875916 (+) True cers4a
XM_043222866.1 mRNA downstream 130277 2959108 ~ 2963003 (+) True LOC122327475
XM_043222618.1 mRNA downstream 139664 2968495 ~ 2977582 (+) False c22h19orf44
XM_043222619.1 mRNA downstream 139664 2968495 ~ 2977582 (+) False c22h19orf44
XM_043222617.1 mRNA downstream 144506 2973337 ~ 2977582 (+) True c22h19orf44
TU219297 other upstream 625215 2143885 ~ 2145560 (+) True G148388
unassigned_transcript_2538 other upstream 640634 2130069 ~ 2130141 (+) True trnam-cau_117
TU219247 other upstream 913640 1854873 ~ 1857135 (+) False LOC122327951
XR_006247737.1 other upstream 1131769 1626562 ~ 1639006 (+) False LOC122327950
TU219153 other upstream 1145585 1624472 ~ 1625190 (+) True G148295
XR_006247636.1 other downstream 215807 3044638 ~ 3047776 (+) False loxl5a
XR_006247629.1 other downstream 285371 3114202 ~ 3152565 (+) False LOC122327293
XR_006247630.1 other downstream 285371 3114202 ~ 3152436 (+) False LOC122327293
TU220335 other downstream 394797 3223628 ~ 3224490 (+) False tma7
TU220341 other downstream 400436 3229267 ~ 3235787 (+) False dnase1l4.2

Expression Profile