RNA id: TU219335


Basic Information

Item Value
RNA id TU219335
length 325
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G148406
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2151775 ~ 2153176 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTAGCCGTTCTGTTGTCTGGGCTCTCGTAGCCTCTGACGTCCAACTTCTCCTTCAGCTCGTTCTCGAAGCGGGCCAGATCAGCATCCAGCCGTCGGATGTGTTTGTCCACCTGgtgagaggaggagaagaagaagaagaaggagaagaagaagaagaagaagaagaagaaaggagaagaaggcttttttaataaagctatTCAAAAAAGCAGTGCttgactatttattttttttttttttttcttgtatttttcttttctttataaaaactcaatttattattttagggcagagtaaaacacaaaaaatagaTTTGATGAAAAC

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219327 lncRNA upstream 7703 2143101 ~ 2144072 (+) True G148403
TU219328 lncRNA upstream 8040 2143101 ~ 2143735 (+) False G148403
TU219318 lncRNA upstream 9425 2140507 ~ 2142350 (+) True G148402
TU219321 lncRNA upstream 9425 2140507 ~ 2142350 (+) False G148402
TU219314 lncRNA upstream 13016 2138263 ~ 2138759 (+) True G148401
TU219424 lncRNA downstream 185643 2338819 ~ 2340411 (+) True G148452
TU219958 lncRNA downstream 365754 2518930 ~ 2519142 (+) True G148742
TU220005 lncRNA downstream 617599 2770775 ~ 2787036 (+) True G148781
TU220009 lncRNA downstream 617599 2770775 ~ 2837949 (+) False G148781
TU220010 lncRNA downstream 617599 2770775 ~ 2828831 (+) False G148781
XM_043223939.1 mRNA upstream 3970 2146685 ~ 2147805 (+) True cep19
XM_043223712.1 mRNA upstream 31709 2106766 ~ 2120066 (+) True zgc:174224
XM_043223711.1 mRNA upstream 31709 2118973 ~ 2120066 (+) False zgc:174224
XM_043223578.1 mRNA upstream 46734 2054359 ~ 2105041 (+) True LOC122327908
XM_043223609.1 mRNA upstream 59680 2084409 ~ 2092095 (+) True LOC122327922
XM_043223389.1 mRNA downstream 3059 2156235 ~ 2183233 (+) False impact
XM_043223386.1 mRNA downstream 3061 2156237 ~ 2183146 (+) True impact
XM_043223388.1 mRNA downstream 3061 2156237 ~ 2183146 (+) False impact
XM_043223390.1 mRNA downstream 3061 2156237 ~ 2183146 (+) False impact
XM_043223387.1 mRNA downstream 3061 2156237 ~ 2183146 (+) False impact
TU219297 other upstream 6215 2143885 ~ 2145560 (+) True G148388
unassigned_transcript_2538 other upstream 21634 2130069 ~ 2130141 (+) True trnam-cau_117
TU219150 other upstream 270892 1621992 ~ 1880883 (+) True LOC122328040
XR_006247636.1 other downstream 891462 3044638 ~ 3047776 (+) False loxl5a
XR_006247629.1 other downstream 961026 3114202 ~ 3152565 (+) False LOC122327293
XR_006247630.1 other downstream 961026 3114202 ~ 3152436 (+) False LOC122327293
TU220335 other downstream 1070452 3223628 ~ 3224490 (+) False tma7
TU220341 other downstream 1076091 3229267 ~ 3235787 (+) False dnase1l4.2

Expression Profile