RNA id: TU219150


Basic Information

Item Value
RNA id TU219150
length 1478
RNA type TUCP
GC content 0.52
exon number 7
gene id LOC122328040
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1621992 ~ 1880883 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACACATCGATGCTCTTTCATCGGATCAATTGGAGAAGAAACCGCGTTTCTCGAAATTCAATTctggtttaaagaaaaaaagaatcgCATAGTTTAACTCAATGACAGTTTTTCTGCGTGTCTGCAGGCGGGGCGCAGGGCAGCTCTCTCCAGCAGCGCTTCTTCTTTCGGTTTCGATGCCTGTGGATAAATGGCGTCAGAAGCAGGTAGACGTAGTCCACCATTTGATCGTCCTGACATGAGCGACCTGAGGGTCGTGCTTCTAGGAAAGAACAGATCAGAAAACAGACGGGTGGCAAAGGCTTTACTGGATACAATAGTGTTTGGCGAAGTGGCCGTCTCATTCACTGCAGGACAGTGAGAGAATCACAGGAGTAACGCAGGACAGAAAGATCTCGGTCGTCATCAACACTCACCTGCTCCAGACGCATCTCTCCCATCAGCAGGTCACACGCCGCGTGAGAGAGTGCGTGCGTCTGTCTGCTCCGGGGCCGCAGGTGATCCTACTCGTCCTGCAGCGGCACGACTTCGGCGAGGACGACAGACACCGAGCGAAAACCGCGCTGAAGCTCTTCGGTAAACGGGCCGTGAGACACACCATAGTGCTGACCACCAATGAAGAGGCACGCGGAGCAGTGGTCACTTCTAAGAGTAACGCCGTTCGTGATTTAATAACGGAGTGCGGAGGAGGGCACCTGCGCTTCGACGCGGTGAGAGCCGAGTTCTTCAAAAAGACCCAGGAGATACTCCTGAGAGAACGTGAAGAGTATCTCATCTGTGGCACGTTTGAGGATGAAGATCTCAAAGAGAGCACAGAATCACGAGCCGGAGGAGTTATTCAATCAAGACGAACGGAAAAAGGAGCCTTCAAGACGCAGTTTGACTACAGTAAAAAACAGTTCGGTGCTGATGATACCGTGCTAAAATGTGACAAGCGGATGGACGACACAACTTTAGATGATGACCCCAGTATTCAGAGAGTAGAGATGTCTTGTGGTCATGCGGTGACCCCAAAAACCCTGACCGGCTGGTGTCGCAGTCTGCTGGACCAGGGTCAGTATAAATTTTATTGCCCAGCTTTCAAAGACGGGACAGAGAAATGTAATGTGGAGTGGCGTTTGGAGGTCAAGATGTTGCTCAGCGATTCAGAGCAGGCTCACTTCGAGGAGAAGGTGTCTCTTCTGGCAGCAGCTGAGCACTGCGACTTAAGATCATGTCCGAACTGTGGGTCCTACGTGGAGCGAGAAGACCTGAGTAACCTCTGCGTGAGATGCACCATCTGTACATCTGTGAAAAACAAGACCTACCAGTTCTGCTGGCAGTGTCTGAGAGAATGGAGAGGAGCAGCTGGTCATGCTCTCGCTGCGGTCATGAAGACTGCGCGTCAACCCAGACGTCGACAAGCTAGCAAAGTGTACAGATATGAGGCTGTCTTACGTGGAGAACGTGGAGTGTCCGGCCATCCGGGCCTGTCCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219055 lncRNA upstream 75099 1489399 ~ 1546893 (+) True G148224
XR_006247763.1 lncRNA upstream 129511 1491444 ~ 1492481 (+) True LOC122328048
TU219099 lncRNA upstream 193701 1378899 ~ 1428291 (+) True G148255
TU219106 lncRNA upstream 204540 1409917 ~ 1417452 (+) True G148260
TU219109 lncRNA upstream 204540 1411088 ~ 1417452 (+) False G148260
XR_006247747.1 lncRNA downstream 11469 1892352 ~ 1894308 (+) False LOC122328033
XR_006247746.1 lncRNA downstream 11864 1892747 ~ 1894308 (+) True LOC122328033
XR_006247766.1 lncRNA downstream 19309 1900192 ~ 1901491 (+) True LOC122328051
TU219238 lncRNA downstream 36698 1917581 ~ 1918823 (+) True G148344
XR_006247758.1 lncRNA downstream 75331 1956214 ~ 1957580 (+) True LOC122328043
XM_043223716.1 mRNA upstream 25373 1592160 ~ 1596619 (+) True LOC122327993
XM_043223567.1 mRNA upstream 100785 1161343 ~ 1521207 (+) True LOC122327901
XM_043223613.1 mRNA upstream 113671 1502513 ~ 1508321 (+) True LOC122327926
XM_043223602.1 mRNA upstream 176620 1437791 ~ 1445372 (+) False LOC122327918
XM_043223604.1 mRNA upstream 176620 1439226 ~ 1445372 (+) False LOC122327918
XM_043223830.1 mRNA downstream 6728 1887611 ~ 1891509 (+) True LOC122328120
XM_043223746.1 mRNA downstream 20883 1901766 ~ 1907032 (+) True LOC122328023
XM_043223626.1 mRNA downstream 27202 1908085 ~ 1915043 (+) True eps8l3a
XM_043223831.1 mRNA downstream 50708 1931591 ~ 1940567 (+) True LOC122328121
XM_043223832.1 mRNA downstream 61267 1942150 ~ 1949367 (+) True LOC122328122
unassigned_transcript_2534 other upstream 189615 1432305 ~ 1432377 (+) True trnam-cau_116
TU219053 other upstream 237145 1379291 ~ 1384847 (+) True G148222
XR_006247738.1 other upstream 473190 1137717 ~ 1148802 (+) True LOC122327965
XR_006247739.1 other upstream 480183 1137717 ~ 1141809 (+) False LOC122327965
TU219065 other upstream 494762 1125486 ~ 1127230 (+) False G148233
unassigned_transcript_2538 other downstream 249186 2130069 ~ 2130141 (+) True trnam-cau_117
TU219297 other downstream 263002 2143885 ~ 2145560 (+) True G148388
XR_006247636.1 other downstream 1163755 3044638 ~ 3047776 (+) False loxl5a
XR_006247629.1 other downstream 1233319 3114202 ~ 3152565 (+) False LOC122327293
XR_006247630.1 other downstream 1233319 3114202 ~ 3152436 (+) False LOC122327293

Expression Profile