RNA id: XM_043223567.1


Basic Information

Item Value
RNA id XM_043223567.1
length 10268
RNA type mRNA
GC content 0.41
exon number 50
gene id LOC122327901
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1161343 ~ 1521207 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gttcctggactataaagactgcagcaagccactcacctgcaggttgcattgtttcgcctgttctgttgttgtttccCGAGTTTTCCTTAGTCTTAGTTCTCCTGGTTTTGACCGTGCCTGTCTTtggatattctgattgtttgccgcctgacctgacctccgcctgtctctggattttgtgattgcctcgcctcctatatatctgtttaccctgtttgacgcctgcctgctatgaccatgccttcgtttaataaaagcctgcacatggatccgcacgcctcagaccgttcattcATGACAGTAGGTGTCTGCTCATGTACACTTCTTGTGTGAATAGGGGTTGAGAAACGTGGACCAATTTGATCAGCCCCATCAATCTGTATATGGGCAAACCTCAGTACCCTCTCCCTCTTCCCATACTGTTTTGACCATAAGACACTTCCATGTAAGAATCAGCTTTTGAGTACTTCCTACtcgcttctttttttataatataactataaattaaatgtctaacacaaacaaacatatatgaGGACTCATGCAGCTTATAAAACTGCGTATGCAGCAATGCacagaactgaaaaaaagaaagaaaagtaaagacataaaaaaattgtttaaatagtgAAAAATAATCATCGAGGTATCTACTTTGTATTCTATTTTGTATGATCTGTCTGACATTATTCAACAAATCCTTTAAAGTTGACTGGGGAAGATGGGTATTAtctgcaggagagagagaatattGAGTAACAGCAGGTAGCGCTAGAGTACTGATGTAGTTTGTGATCTGCTgttaaaagaagaaagagaaagcaggtgtgtttgtgcttcACATTCTTGTCCAGTGTGTGCTTAACAGCGATCACAAAACCGTAAGCGTTTTAAAGACTTCTGATTTCTCCAAAATAACATCGTCTCAACTACTGCGAAGACACAGGGTCCTGTTCAGGACATGAGGAACATCTGATGATCTTCAGAGACACAAAGATCtcagagaaaagaagaaagagatgaGTCTCTCAAAGAAACCGAGCTCTGTGTCTGTGAAGAGCAACCAGTCAAAAGGTGATCCACCGGGATTCAGTGAGGAGACACCACCAGCTACTGAAAGCTTTGCATCTGTGAAAAGTGACCAGTCAAAAGGTCATCCACCGGAATTCAGTAAAGAAAGTGCATCAAATACTCAAAGTCTTCGATATGAAACATTAACTTCAGACATCCAGATTAACAGGaatcacaaaaaaatcacagacaACTTCCTAGGAATCTTTCagAATCTTGAGaagaaaataatcacatttctaaaaaatgaGCTGGAAATGTTcaagaaaatattacagaaagaCAACAAGCAACAATTTGTGGAGGATTTTAATGAGAACAGATGCAGTAACAGAGAAGCAGCTCTTGATCTCACGCTCTACTTCCTGAGAGAGATGAAGCAAGATAGAGCTGCTGATACTCTAGAAGATGAGCTGATCTTCATTCATCAGCTAAAGTGTAGCCTAAAGAAGAagtataagtgtgtgtttgaaggaATCACAAAGCAAGGAGACTCTACACTTCTGAAGAACATCTACACAGATCTCTATATCACTCAGGGTTTTAGTGAACATGTCAATACTGAACATGAGGTCAGACAGATTGAAGTTGCTTCCAGACGTCATGaaacacaagagaaacaggttgAGTGCaaaaatttatttgaagcaTCTGAACAAGACGAGCAGATCAGAACTGTACTGACAAAAGGAGTCGCTGGCATCGGAAAATCAGTCTCTGTACAGAAGTTTGTTCTGGATTGGgtagaagaaaaagaaaatcaagatATCAGCTTCATATTTCCTcttccattcagagagatgaacttaaaggagaaagaaaaactaagTTTGATAGACCTTTTAACTCAGTTTTTCCCAGAGACAAAAGGACTGAAGCTTACGAGAAGAAATCAGTTCAAAGTCCTGTTCATTCTTGATGGATTGGATGAATGCCGACTTCCTCTAAACTTTAAGGATAATGAGATATTGTGTGATGTTTCATCAGCAGCCTCTCTGGATGTTCTCTTAACAAACCTCAAAGGAAATCTGCTTCCTTCTGCTCTTATCTGGATCACCACCAGACCAGCAGCTGCCAGTAAGATTCCTCCTGAATGTATCGAGCGGCTGACAGAGATACGAGGATTCAATGATGCAGAAGGAGGAGGAGTACTTCGGAAAAGATTCACGGATCAGAATCAGGCCAAAGAAATCATTGATCATGTTAAACAATCAAAGAGTCTCTTtatcatgtgccacatcccagtcttctgctggatttCAGCCACAGTTctccagaacattttagaagagaaaagaaaaaatgtgatgaaaattAATGAGTCTGAAGATGCCTCCAAAACACTACAGGAGTCAAATACTGAAGACACTCCTAAGACTCTGacacaaatgtacacacactttcTTAGATTTCAGATCCAGCAGAGCAGAAGAAAGTATGATGGAGAACACACACCAGATGTTTCCTGGGATAAAGATGCCATCTTTTCTCTGGGGAAACTGGCATTTGATCAGCTGGAAAGAAACAATGTGGTCTTCTATGACACAGATCTGGAAGCATGTGGTATTGACGTCTATAAGGCTTCAGTGTACTCAGGCATGTGTACTCAGATCTTTAAGGAGGAAACAGGGATCGTTCTTGGTACCATGTACTGCTTCGTTCATTTGAGCATTCAAGAGTTTATTGCAGCTCTTTATGCTCATCTCTTTCTGGAcctcaacaaaaaaagtgtgtttgatcGAGACTCTAcacaacaagaaaacaaaagtgaaattgATTTCCTCAAGACTGCAGTGGACAAGGCTCTAGAGAGTGATAATGGACGAGATCTTTTCTTCGATTCCTCCTTGGTTTGTCACACCCagtccaatcagagactcttacagGGTCTGTTGACacagaaaaatagaaatgaccAGATCAAAAAGGAAATAGTTGAGTACATCAAGCAGAAATTTGAAGCTAATCTGTCTCCAGAGAGATACATCAATCTGTTCTACTGTCTGAATGAATTGAACGACCAAACTCTGGTGAAAGAGATTCAGACCCACCTCAACAAAGGGAGACTCTCATCTGCTGACCTTTCTCCTTCCCAGTGGTCTGCTTTGGTCTTTGTGTTGTTGACATcagaggaggagctggaggagtttGATCTTCAGAAATTCAAGAAATCAGACGAGTGTCTCATTAGATTATCATCAGTCATAACCTCCAAAAGAGCTCTGCTAAGTGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGAATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctgcaggattcaggagtgaagctgctctgcaCTGGACTGAAGAATGCTAATTGTAAATTAGAGATACTGAGACTCTCAGACTGCAGTATCAGTGAAGAAGGTTATAAAGCTCTGTCTTCAGCCCTGAGATCAAACCCTTCACACCTGATAGAGCTGGATCTCATAGGAAATGATCCTGGATCATCAGGAGTGAAGGAGCTCAGTGATTTACTTCAGGATCCTAACTGTCAACTAAACACACTGAGGCTAAATGATTGTGGTTTAACAGACAAAAGCTGTTCAGTTCTGGCTTCAGTTCTTGGATCAGATTTCAGTCTGAAAGAGCTgaacatgaacaataataatctgcaggattcaggagtgaagctgctctgcaCTGGACTGAAGAATATTAATTGTACATTAGAGATACTGAGGTTGTGTGATTGTGGTTTATCAGAGGAAAGCTGTTCAGCTCTTGCTACAGTCCTGAGATCAAATTGCAGTCTGAAAGAGCTTGACATGAGCAACAAtaatctgcaggattcaggagtcaAGAAACTCCAGAACGCTTTAGAAAATACAGAATGCACATTGGAGAACCTCAGaCTCTCAGACTGCAGTATCAGTGAAGAAGGTTATAAAGCTCTGTCTTCAGCCCTGAGATCAAACCCTTCACACCTGATAGAGCTGGATCTCATAGGAAATGATCCTGGATCATCAGGAGTGAAGGAGCTCAGTGATTTACTTCAGGATCCTAACTGTCAACTAAACACACTGAGGCTAAATGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGAATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctgcaggattcaggagtgaagctgctctgcaCTGGACTGAAGAATGCTAATTGTACATTAAAGATACTGAGGTTGTGTGATTGTGGTTTAACAGAGGAAAGCTGTTCAGCTCTTGCTACAGTCCTGAGATCAAATTCCAGTCTGAAAGAGCTTGACATGAGCAAAAAtaatctgcaggattcaggagtcaAAAAACTTCAGAGCGCTTTAGAAAATACAGAATGCACACTGGAGAACCTCAGaCTCTCAGACTGCAGTATCAGTGAAGAAGGTTATAAAgctctgtcttcagctctgagatcaaacccttcACACCTGATAGAGCTGGATCTCATAGGAAATGATCCTGGATCATCAGGAGTGAAGGAGCTCAGTGATTTACTTCAGGATCCTAACTGTCGACTAAACACACTGAGGTTTTTGGGTCCTGCTGCAGATGAAGGCTGTCAGTATGTGACTGGAATTGTGGGTAAAAACCCGTTACTCCTGAAAGAGCTGAATCTGAGTGAACATGAACTAGGAGACACACGAGTGAATCAGATCTCTGCTCTACTGCAGGATAAACACTGTCAGATCAACACACTGAAGCTAAATGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGAATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctacaggattcaggagtgaagctgctctgcaCTGGACTGAAGAATGCTAATTGTAAATTAGAGATACTGAGaCTCTCAGACTGCAGTATCAGTGAAGAAGGTTATAAAgctctgtcttcagctctgagatcaaacccttcACACCTGATAGAGCTGGATCTCATAGGAAATGATCCTGGATCATCAGGAGTGAAGGAGCTCAGTGATTTACTTCAGGATCCTAACTGTCAACTAAACACACTGAGGTTTTTGGGTCCTGCTGCAGATGAAGGCTGTCAGTATGTGACTGGAATCGTGGGTAAAAACCCGTTACTCCTGAAAGAGCTGAATCTGAGTGAACATGAACTAGAAGACACACGAGTGAATCAGATCTCTGCTCTACTGCAGGATAAACACTGTCAGATCAACACACTGAAGCTAAATGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGAATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctgcaggattcaggagtgaagctgctctgcaCTGGACTGAAGGATATTAATTGTACATTAAAGATACTGAAGTTGTGTGATTGTGGTTTATCAGAGGAAAGCTGTTCAGCTCTTGCTACAGTCCTGAGATCAAATTCCAGTCTGAAAGAGCTTGACATGAGCAACAATAATCTGCAGAGTTCAGGAGTCAAGAAACTCAAGAACGCTTTAGAAAATACAGAATGCACATTGGAGAACCTCAGactCTCAGACTGCAGTATCAGTGAAGAAGGTTATAAAgctctgtcttcagctctgagatcaaacccttcACACCTGATAGAGCTGGATCTCACAGGAAATGATCCTGGATCATCAGGAGTGAAGGAGCTCAGTGATTTACTTCAGGATCCTAACTGTCAACTAAACACACTGAGGCTAAATGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGGATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctgcaggattcaggagtgaagctgctctgcaCTGGACTGAAGAATGCTAATTGTACATTAGAGATACTGAGGCTAAATGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGAATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctgcaggattcaggagtgaagctgctctgcaCTGGACTGAAGGATATTAATTGTAAATTAGAGATACTGAGGCTAAATGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGGATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctgcgggattcaggagtgaagctgctctgcaCTGGACTGAAGGATATTAATTGTACATTAAAGATACTGAGGTTGTGTGATTGTGGTTTAACAGAGGAAAGCTGTTCAGCTCTTGCTACAGTCCTGAGATCAAATTCCAGTCTGAAAGAGCTTGACATGAGCAACAAtaatctgcaggattcaggagtcaAGAAACTCAAGAACGCTTTAGAAAATACAGAATGCACACTGGAGAACCTCAGaCTCTCAGACTGCAGTATCAGTGAAGAAGGTTATAAAgctctgtcttcagctctgagatcaaacccatcACACATGATAGAGCTGGATCTCATAGGAAATGATCCTGGATCATCAGGAGTGAAGGAGCTCAGTGATTTACTTCAGGATCCTAACTGTCAACTAAACACACTGAGGTTTTTGGGTCCTGCTGCAGATGAAGGCTGTCAGTATGTGACTGGAATTGTGGGTAAAAACCCGTTACTCCTGAAAGAACTGAATCTGAGTGGACATGAACTAGGAGACACACGAGTGAATCAGATCTCTGCTCTACTGCAGGATAAACACTGTCAGATCAACACACTGAAGCTAAATGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGAATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctacaggattcaggagtgaagctgctctgcaCTGGACTGAAGGATATTAATTGTACATTAAAGATACTGAGGTTGTGTGATTGTGGTTTAACAGAGGAAAGCTGTTCAGCTCTTGCTACAGTCCTGAGATCAAATTCCAGTCTGAAAGAGCTTGAAATAAGCAACAATAATCTGCAGAGTTCAGGAGTCAAGAAACTCCAGAGCGCTTTAGAAAATACAGAATGCACATTGGAGAACCTCAGACTCTCAGACTGCAGTATCAGTGAAGAAGGTTATAAAgctctgtcttcagctctgagatcaaacccttcACACCTGATAGAGCTGGATCTCATAGGAAATGATCCTGGATCATCAGGAGTGAAGGAGCTCAGTGATTTACTTCAGGATCCTAACTGTCAACTAAACACACTGAGGTTTTTGGGTCCTGCTGCAGATGAAGGCTGTCAGTATGTGACTGGAATCGTGGGTAAAAACCCGTTACTCCTGAAAGAGCTGAATCTGAGTGGACATGAACTAGAAGACACACGAGTGAATCAGATCTCTGCTCTACTGCAGGATAAACACTGTCAGATCAACACACTGAAATTAAGAGGCTGTTATATGACAGATGAAGGTTGTTCTGCTGTGACTTCAGCTCtaaaatcaaacccatcacacctgagagaactggaccTGAGTGAGAATAAACTCGGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTAGATCTCTGTAGATGCAGtattacagagaaacagagtctCATCCTGACTTCAGCTCTGATAACAAATccatcacacctgagagaactgaacctgagcttgaatcataaaaacacaggagTGAATCACTTATGTGACATACTGAAGGATTCACACTGTAAACTGGAGAGATTGAGGTTAAGAGGCTGTGAAATGACAGATGAATGTTGTTCTGCTctgacttcagctctgaaatcaaacccatcacacctgagagaactgaacCTGAACGGgaatcaaatagaaaacatagGAGTGAATCACTTATTTGACATACTGAAGGATTCACACTGTAAACTTGAGAGATTGATGTTAAGCAGCTGTGGTTTGACAGCTGAAGGTTGTTCTGCTGtgacttcagctctgaaatcaaacccatcacacctgagagaactgaacCTGAGTGAGAATAAACTCGGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTAGAtcTGTTTTACTGCAGtattacagagaaacagagtttcatcctgacttcagctctgaaatcaaacccatcacacctgagagaactgaacctgagtgagaatgaaataaaaaatacaggaGTGAATCACTTATGTGACGTACTGAAAGATTCCCACTGTAAACTGGAGAGACTGAGGTTAAGCAGCTGTGGTTTGACAGATGAAGGTTGTTCTGCTGTGACTTCAGCTCTACaatcaaacccatcacacctgagagaactgaacCTGAGTGAGAATAAACTCGGAGACTATGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGAAGAAACTAGAtctATGTGGATGCAGtattacagagaaacagagtctcatcctgacttcagctctgaaatcaaacccatcacacctgagagaactgaacCTGAGCTGGAATAAACTCAGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTAAAGTTAAGCAGCTGTGGTTTGACAGAAGAAGGTTGTTCTGCTGtgacttcagctctgaaatcaaacccatcacacctgagagaactggaccTGAGCTGGAATGAACTCAGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTAGAtctgTCTGGATGCAGtattacagagaaacagagtctcatcctgacttcagctctgaaatcaaacccatcacacctgagagaactgaacCTGAGCGGGAATGAACTCAGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTAGAtctgTGGAGATGCAGtattacagagaaacagagtctcatcctgacttcagctctgaaatcaaacccatcacacctgagagaactggaccTGAGCGAGAATGAACTCAGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTACAtctgTCTGGATGCAGtattacagagaaacagagtctcatcctgacttcagctctgaaatcaaacccatcacacctgagagaactggaccTGAGCGAGAATGAACTCGGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTAGATCTTTGTCTCTGTGACATTACAGATGTTTCTTCTTTAACTCAGTGtttgacaaaaacagaaacactgcaGTTTCTAAAAGAGCTTGATCTGAGTTTTAATGAGATCAGAGACTCAAAGCAGCAGCTCATTGATGTGCTACGAGACTCAAACTGTAAACTGAGAATAGATAGAGATCCATTATTAGAAGTATATAGAAGAAGATTTCAGATTTCAGTCTTCAATTGAGGATAAATGCTGTATATTATAGTTTGAGATCATCTTGAGAGGAGCAGTAAACATCAGATGAAGATCCACAGAAGAACTTCACTATGTGTCTATGAGgagaaataaatgtgtgataaatgtgtaaatatgattCATACAGGTGAAGAGACTCAGACTTTACAATCAAATAATGCAGCTTGTGTGTTAGAAACATATTGAAtcattaatattgatttaatatttaccCTAATGATCATGTTTCAATTAAAGCTAAACAGAGGAAGAAGCTCAGATGAGTCTGACTCttcagtttaataatatttgtattaaaccCATTCATAATGATCagtataataatgaatatgtattaaaaaaagcaattattatgaagttagatttgtgtgtgtctgtttttattaatcataaatCCTCTCTTTACAATAAACAAAGCAGAAACACCATGTAAATAAAAGCTGGATTGTGGAGTTTGTGTTGAACTGATGAGTTataatgatgaataaaatgaataaaactgatgaataaaaatgagttaTGTAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219024 lncRNA upstream 110433 1050685 ~ 1050910 (+) True G148219
TU218746 lncRNA upstream 149707 1009390 ~ 1011636 (+) True G148033
TU218713 lncRNA upstream 268120 892589 ~ 893223 (+) True G148002
XR_006247765.1 lncRNA upstream 332228 825151 ~ 829115 (+) True LOC122328050
TU218691 lncRNA upstream 411696 749048 ~ 749647 (+) True G147984
TU219151 lncRNA downstream 100785 1621992 ~ 1880171 (+) False LOC122328040
XR_006247755.1 lncRNA downstream 100786 1621993 ~ 1622838 (+) False LOC122328040
TU219148 lncRNA downstream 101685 1622892 ~ 1624279 (+) False LOC122328040
TU219158 lncRNA downstream 121903 1643110 ~ 1644215 (+) True G148299
TU219178 lncRNA downstream 178697 1699904 ~ 1777171 (+) True G148312
XM_043223685.1 mRNA upstream 20201 1137717 ~ 1141142 (+) False LOC122327965
XM_043223827.1 mRNA upstream 25238 1134471 ~ 1136105 (+) True LOC122328116
XM_043223674.1 mRNA upstream 36413 1122850 ~ 1124930 (+) True LOC122327961
XM_043223675.1 mRNA upstream 36413 1122850 ~ 1124930 (+) False LOC122327961
XM_043223825.1 mRNA upstream 39677 1113164 ~ 1121666 (+) True LOC122328115
XM_043223716.1 mRNA downstream 70953 1592160 ~ 1596619 (+) True LOC122327993
XM_043223658.1 mRNA downstream 105355 1626562 ~ 1638777 (+) True LOC122327950
XM_043223656.1 mRNA downstream 105355 1626562 ~ 1637533 (+) False LOC122327950
XM_043223657.1 mRNA downstream 105355 1626562 ~ 1637533 (+) False LOC122327950
XM_043223598.1 mRNA downstream 160487 1681694 ~ 1687771 (+) True LOC122327916
XR_006247738.1 other upstream 12541 1137717 ~ 1148802 (+) True LOC122327965
XR_006247739.1 other upstream 19534 1137717 ~ 1141809 (+) False LOC122327965
TU219065 other upstream 34113 1125486 ~ 1127230 (+) False G148233
TU219066 other upstream 34113 1125601 ~ 1127230 (+) True G148233
TU219018 other upstream 144676 1015779 ~ 1016667 (+) True G148214
TU219150 other downstream 100785 1621992 ~ 1880883 (+) True LOC122328040
TU219153 other downstream 103265 1624472 ~ 1625190 (+) True G148295
XR_006247737.1 other downstream 105355 1626562 ~ 1639006 (+) False LOC122327950
TU219247 other downstream 333666 1854873 ~ 1857135 (+) False LOC122327951
unassigned_transcript_2538 other downstream 608862 2130069 ~ 2130141 (+) True trnam-cau_117

Expression Profile