RNA id: XM_043223827.1


Basic Information

Item Value
RNA id XM_043223827.1
length 812
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC122328116
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1134471 ~ 1136105 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCAGTGAAACTCCTCCCACAACATTCTCGCCTTCAGTGAAACCCCTCCCACAACAATCACACCttcagtgaagctcctcccactGCGGTTCAGTAATAAATGCTGGAATATTCCCATCAGTCTACAAGTGAAGACGAGCATCAGAGAATCAGGAAGAAGAGAAATctgcagaaacagagagaacatGAGAGATCCAGAACCCTGCAGAATGAAACACACTGAAGAACAAACAGAAAAAACTCTCTTGCAGAAAAATTTCCTGAAAAGAAGAAATGAGAAGAGTTTCACTTGCATTCAGTGTGGAAGGAGTGTGAAATGCAAACGTGATCTTAATATTCACATGatgatccacaccggagagagaccGTTCAcgtgtgatcagtgcgggaagagtttcagaCAATCATCACACTTTAAAAACCACATGAACATCCACACCAGAGAGAAACTGTATGAATGTGATCAATGTGGAAAGACGTTTTTGCGGGCTTCAGGACTGAAGGCGCATATGAAAGTACATTCAAATGTGAAGCCACATTCATGTTCtttgtgtggaaagagtttttcCAAACTGCAGACTTTACAAGTTCACCAGAAGATACACACTGGTGTGAGAGACTACATGTGCTTCCAGTGTGAGAAGACCTTTATTACAGCTGGACATTTGAGTCGGCACCAGAGGATCCACgctggagagaaaccttacaagtgttcacactgcGACAAGAGATTCAATACGTCAGGAAACCTGAAAAAACATAAgaggatccacactggagagaacaTAATGCtgtcccatattgactTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219024 lncRNA upstream 83561 1050685 ~ 1050910 (+) True G148219
TU218746 lncRNA upstream 122835 1009390 ~ 1011636 (+) True G148033
TU218713 lncRNA upstream 241248 892589 ~ 893223 (+) True G148002
XR_006247765.1 lncRNA upstream 305356 825151 ~ 829115 (+) True LOC122328050
TU218691 lncRNA upstream 384824 749048 ~ 749647 (+) True G147984
TU219058 lncRNA downstream 47415 1183520 ~ 1190524 (+) True G148226
XR_006247759.1 lncRNA downstream 200013 1336118 ~ 1338916 (+) True LOC122328044
TU219094 lncRNA downstream 204132 1340237 ~ 1359295 (+) True G148251
TU219099 lncRNA downstream 242794 1378899 ~ 1428291 (+) True G148255
XR_006247753.1 lncRNA downstream 265740 1401845 ~ 1405144 (+) True LOC122328038
XM_043223674.1 mRNA upstream 9541 1122850 ~ 1124930 (+) True LOC122327961
XM_043223675.1 mRNA upstream 9541 1122850 ~ 1124930 (+) False LOC122327961
XM_043223825.1 mRNA upstream 12805 1113164 ~ 1121666 (+) True LOC122328115
XM_043223723.1 mRNA upstream 98354 1030351 ~ 1036117 (+) True si:ch211-103a14.5
XM_043223688.1 mRNA upstream 111610 1017009 ~ 1022861 (+) False wdr77
XM_043223685.1 mRNA downstream 1612 1137717 ~ 1141142 (+) False LOC122327965
XM_043223567.1 mRNA downstream 25238 1161343 ~ 1521207 (+) True LOC122327901
XM_043223745.1 mRNA downstream 86591 1222696 ~ 1228583 (+) True LOC122328021
XM_043223744.1 mRNA downstream 138329 1274434 ~ 1285114 (+) True LOC122328020
XM_043223610.1 mRNA downstream 175908 1312013 ~ 1346551 (+) True LOC122327924
TU219065 other upstream 7241 1125486 ~ 1127230 (+) False G148233
TU219066 other upstream 7241 1125601 ~ 1127230 (+) True G148233
TU219018 other upstream 117804 1015779 ~ 1016667 (+) True G148214
TU218551 other upstream 340465 791234 ~ 794006 (+) True G147888
TU218692 other upstream 382962 750279 ~ 751509 (+) True G147985
XR_006247738.1 other downstream 1612 1137717 ~ 1148802 (+) True LOC122327965
XR_006247739.1 other downstream 1612 1137717 ~ 1141809 (+) False LOC122327965
TU219053 other downstream 243186 1379291 ~ 1384847 (+) True G148222
unassigned_transcript_2534 other downstream 296200 1432305 ~ 1432377 (+) True trnam-cau_116
TU219150 other downstream 485887 1621992 ~ 1880883 (+) True LOC122328040

Expression Profile