LOC122328044


Basic Information

Item Value
gene id LOC122328044
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1336118 ~ 1338916 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247759.1
TAAAGACTTCTGAATTCTGTTTCTCCAAAATAACATCGTCTCAACTACTGCGAAGACACAGGGTCCTGTTCAGGACATGAGGAACATCTGATGATCTTCAGTGACACAAAGATCtcagagaaaagaagaaagagatgaGTCTCTCAAAGAAACCGAGGTGCTGATATAAATTTGTCGTATAGCCACGTGACATAACAACCTTTAAACTTTGTACCTCTCTCTGCGTAGTGTCAGCAATCTTAAAGACAATATTGTGCCACATAACAGAGAAAATATCATGTAGTGATAAATGAATTACCAATATAAGTATATTAACTactagtaaaataataataaggtgAGAGATTAGACAGATTTACAGAAGATCTAGCAGGTCCAGGTTCTGCTGTAAACCATGTTGAGAAGGAGACAGAAGCAGATCATCTGATCTGTGAGTTGTGTTGAGTGAGGCAGCGGCTGACCGTTCAttgatgtaaatgttaaataatgttgtTCTTCAGCAGCTCCTCTCTCACTCCACACTCCTGGGAAAGATACCTTGTACATTTGGTGATGATAATGACACCATAAttatgttctgtgtatattgATTTAATGAGAGCATAGGTTTTACCTCCTGTGCCACTTTCAATAAGGTTGTAAAACAGATCTTGGTGCCAAATTGAGTCagaattgtttatatttttaccttttgtcTTGGTGAAGATGTTTTTCAAGAAGTAATattgtcacgaatgaggggcctgaggcgtgcggatacatatgcaggcttttattaaagtaaggcatggtcaaaacaggcaggcgtcaaacagggcaaacagatgtataagaGGCGAGGCAAATACAAAATCCAAGAACAGGCgaaggtcgggtcaggcagcaaacaatcacagaatctaaagacaggcagggtcaaaaccaagagaACTAAGACTAAGGAAACTCGggaaacaacaatagaacaggcgaaacaatgcaacctgcaggtgagtggcttgctgcagactttatagtcctggaacaggaagttgtcgcagagggagtgaatgcagatcacccagaggtcaggactccctctgctggcttggtgacaaatATGTAGATGTGATCAGATTTACAGCAGTTTGGTAAAAATAAGATTTGACTTATCTCAGATTGTGTGTGGTTATGAAGTCTAATAGatcataatacataataatagaTGTTTATTATGCTACAGAATCATTTTTCCTCACAAAGATGTTTCTGTAGATGTTAGGATCAAATTAATCATTCATCATTATCAGTCCTTTATCAACCCATGTTTTTTTGGAATGCGCTGACCGAGAAAATTGTgttatttagttagttatttgtgttatttagtgttattaagacatttttaacagataagcaaattagatttttagagtttaattataaaaatgtaacgtctccgttccctccaTTATGGAATAAGTGCTCcctatctgtcagtcactatgaaatttggcaagtggttaactaatcatGAGCTACTCCCCATCACGCGGGTATAAATAGGCCACAGGTGTTGCAGATTTTGCTTGGGAGCCCAGTGCTGCATGGTTGCTGTACTAGCACTTTTGCTAGCGGAAAAAGCTGGAAAAGGAACTGTTTGTGTGGCGGTTTGACACAATCACTGGCGTCCCTGTTTG

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247759.1 True 1679 lncRNA 0.39 3 1336118 1338916

Neighbor

gene id symbol gene type direction distance location
LOC122328020 LOC568664 coding upstream 51004 1274434 ~ 1285114 (+)
LOC122328021 LOC568664 coding upstream 107535 1222696 ~ 1228583 (+)
LOC122328116 NA coding upstream 200013 1134471 ~ 1136105 (+)
LOC122327961 LOC107711386,LOC107579500,LOC107662827 coding upstream 211188 1122850 ~ 1124930 (+)
LOC122328115 NA coding upstream 214452 1113164 ~ 1121666 (+)
LOC122327991 NA coding downstream 83443 1422359 ~ 1423773 (+)
trnam-cau_116 NA coding downstream 93389 1432305 ~ 1432377 (+)
LOC122327918 LOC107710809,LOC107574827,LOC107667624,LOC107698297,LOC107575765,LOC107570670 coding downstream 98875 1437791 ~ 1445372 (+)
LOC122327926 LOC568664 coding downstream 163597 1502513 ~ 1508321 (+)
LOC122327993 NA coding downstream 253244 1592160 ~ 1596619 (+)
G148226 NA non-coding upstream 145594 1183520 ~ 1190524 (+)
G148219 NA non-coding upstream 285208 1050685 ~ 1050910 (+)
G148033 NA non-coding upstream 324482 1009390 ~ 1011636 (+)
G148002 NA non-coding upstream 442895 892589 ~ 893223 (+)
LOC122328050 NA non-coding upstream 507003 825151 ~ 829115 (+)
G148251 NA non-coding downstream 1321 1340237 ~ 1359295 (+)
G148255 NA non-coding downstream 39983 1378899 ~ 1428291 (+)
LOC122328038 NA non-coding downstream 62929 1401845 ~ 1406107 (+)
G148260 NA non-coding downstream 71001 1409917 ~ 1417452 (+)
G148224 NA non-coding downstream 150483 1489399 ~ 1546893 (+)
LOC122327965 NA other upstream 187316 1137717 ~ 1148802 (+)
G148233 LOC107571167,LOC107662825,LOC107663547 other upstream 208888 1125486 ~ 1127230 (+)
G148214 wdr77 other upstream 319451 1015779 ~ 1016667 (+)
G147888 LOC107732183,LOC107723096,LOC107572363,LOC107698292,LOC107750676,LOC107656899 other upstream 542112 791234 ~ 794006 (+)
G147985 LOC107723118,LOC107656907,LOC107572366 other upstream 584609 750279 ~ 751509 (+)
G148222 NA other downstream 40375 1379291 ~ 1384847 (+)
LOC122328040 NA other downstream 283076 1621992 ~ 1880883 (+)
G148295 NA other downstream 285556 1624472 ~ 1625190 (+)
LOC122327950 NA other downstream 287646 1626562 ~ 1639006 (+)
LOC122327951 NA other downstream 515951 1854867 ~ 1857142 (+)

Expression


Co-expression Network