LOC122327961 (LOC107711386,LOC107579500,LOC107662827)


Basic Information

Item Value
gene id LOC122327961
gene name LOC107711386,LOC107579500,LOC107662827
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1122850 ~ 1124930 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223674.1
CGGAACGTTTGTTCTTCCGGACCGGCCAGCCGCTGCTGTTAGTCGTGTCGAAATAGCTAATATGTTACTTTACTGGTGATACTTGTCATAATCAGGATACGCGTTCGGAACGGATAACGTTTAACTGTCTGTTGTAGCCGCGCGAGGTGGAACGCATATATCGCTGAAACTGACAGCAAAACGTAAACATCTCGATGTAAAATGCGCCGATGTCCTGCTGATCGTAAATCACTCCGTATGGAGAGACCGCACGATGTCGTTAACTACATCAGCGGTCATTACTTCGCTTTTTAACATGACCGCGACAGTTTATAGCGACGTTGTTAACGCTGTTCTCAGAACAAAAGGCAGCAGGGATGTATCTGGCCTGTCATACCTCTGGGTTAAGGGGTGAAACgcaaaaataatagtttttaagagaaaactgaaaacatgatCCATAATCTCGCAGTATGAAACCCAACGAAGATACTGAAGGACAAAGAGCTTATGTTCATTTAGGTCTGATGGACGTAAAAGAGGAACGTGAAGACTCGGATGAGGTGGAGGAGCAACGTTATCACTCCATCGCCGATGAAGAACCTTTGACCCTCACGCAAAAAACAACCAAAGTCAAGAAGTCTTACATCTGCCCTCAGTGCGGGAAGTGTTTTGCAGGTAAATCGCGACTCGAGCGCCACATAagaatccacaccggagagaagcctttcgcGTGTTTTGTGTGCGCCAAGAGTTTCGCGTGTAAAGAACGACTCGACAGGCACATAaaaatccacaccggagagaagcccttcaCGTGCGAGTGGTGCGGAAAGCGCTTGGCGTGCAAAACGAGGCTCAAGAGGCACGTGATAACCCACACTGGGAAAAAGCCTTACGCGTGCTTGCATTGCGAAAGGAGCTTCACGACGAACACCAACCTGCAGCGGCACGTCAAactccacaccggagagaggcCGCACACGTGCCAagagtgcgggaagagcttcataCGCAAGGAAAAGCTCCGCTTTCACATGACGATCCACACTGGAGAGCGGCCTTACAGTTGCGAACAATGTGGGAAGAGTTTCCGACACGTCAACGGCCTCAAAGATCACCAGCTCTCTCACGCCGCCGAACGGTCTTTTAGCTGTGATCAATGCGGTAAGGATTTCATTACTGCGTCGGCGCTGAAGAGACACCTGAGAGTTCATTCGGGTGAGAAGCCTTTCTTGTGCTCTCTCTGCGGAAAGAGTTTCGCGCGAGTGGACTGCTTTAAAAGGCATCAGGAGGTCCATAGCGGTGTGAAGGATCACGTGTGTTATGAATGCGGCAAGGCTTTTATTACCTCCGACCAGCTCAAGCAGCACCAGAGGATTCACACGGGAGAGAAACCGTACAAGTGCTCGCTTTGTGGGAAGGGTTTCGCTCAGTCGCCGCACCTGAAAGCGCACGAGAAAAGCCACACCGCTGAGAGCCTGGTAATAAGCGATCAAATTATCTACTGATTCACACGGAAAATGCGCGATTCGAAGGTACCTCGCGAATCTGAATCCCGTAAAAGGATTCAACCAAACCTTTTGTTTCAACGTTGCATCTGAATACAgcaaataaactgttttatcaCCAGGTC
>XM_043223675.1
CGGAACGTTTGTTCTTCCGGACCGGCCAGCCGCTGCTGTTAGTCGTGTCGAAATAGCTAATATGTTACTTTACTGGTGATACTTGTCATAATCAGGATACGCGTTCGGAACGGATAACGTTTAACTGTCTGTTGTAGCCGCGCGAGGTGGAACGCATATATCGCTGAAACTGACAGCAAAACGTAAACATCTCGATGTAAAATGCGCCGATGTCCTGCTGATCGTAAATCACTCCGTATGGAGAGACCGCACGATGTCGTTAACTACATCAGCGGTCATTACTTCGCTTTTTAACATGACCGCGACAGTTTATAGCGACGTTGTTAACGCTGTTCTCAGAACAAAAGGCAGCAGGGATGTATCTGGCCTGTCATACCTCTGGGTTAAGGGGTGAAACgcaaaaataatagtttttaagagaaaactgaaaacatgatCCATAATCTCGCAGTATGAAACCCAACGAAGATACTGAAGGACAAAGAGGTCTGATGGACGTAAAAGAGGAACGTGAAGACTCGGATGAGGTGGAGGAGCAACGTTATCACTCCATCGCCGATGAAGAACCTTTGACCCTCACGCAAAAAACAACCAAAGTCAAGAAGTCTTACATCTGCCCTCAGTGCGGGAAGTGTTTTGCAGGTAAATCGCGACTCGAGCGCCACATAagaatccacaccggagagaagcctttcgcGTGTTTTGTGTGCGCCAAGAGTTTCGCGTGTAAAGAACGACTCGACAGGCACATAaaaatccacaccggagagaagcccttcaCGTGCGAGTGGTGCGGAAAGCGCTTGGCGTGCAAAACGAGGCTCAAGAGGCACGTGATAACCCACACTGGGAAAAAGCCTTACGCGTGCTTGCATTGCGAAAGGAGCTTCACGACGAACACCAACCTGCAGCGGCACGTCAAactccacaccggagagaggcCGCACACGTGCCAagagtgcgggaagagcttcataCGCAAGGAAAAGCTCCGCTTTCACATGACGATCCACACTGGAGAGCGGCCTTACAGTTGCGAACAATGTGGGAAGAGTTTCCGACACGTCAACGGCCTCAAAGATCACCAGCTCTCTCACGCCGCCGAACGGTCTTTTAGCTGTGATCAATGCGGTAAGGATTTCATTACTGCGTCGGCGCTGAAGAGACACCTGAGAGTTCATTCGGGTGAGAAGCCTTTCTTGTGCTCTCTCTGCGGAAAGAGTTTCGCGCGAGTGGACTGCTTTAAAAGGCATCAGGAGGTCCATAGCGGTGTGAAGGATCACGTGTGTTATGAATGCGGCAAGGCTTTTATTACCTCCGACCAGCTCAAGCAGCACCAGAGGATTCACACGGGAGAGAAACCGTACAAGTGCTCGCTTTGTGGGAAGGGTTTCGCTCAGTCGCCGCACCTGAAAGCGCACGAGAAAAGCCACACCGCTGAGAGCCTGGTAATAAGCGATCAAATTATCTACTGATTCACACGGAAAATGCGCGATTCGAAGGTACCTCGCGAATCTGAATCCCGTAAAAGGATTCAACCAAACCTTTTGTTTCAACGTTGCATCTGAATACAgcaaataaactgttttatcaCCAGGTC

Function

NR:

description
PREDICTED: gastrula zinc finger protein XlCGF8.2DB-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223674.1 True 1615 mRNA 0.49 2 1122850 1124930
XM_043223675.1 False 1600 mRNA 0.49 2 1122850 1124930

Neighbor

gene id symbol gene type direction distance location
LOC122328115 NA coding upstream 1184 1113164 ~ 1121666 (+)
si:ch211-103a14.5 si:ch211-103a14.5,LOC107710811,LOC107667641,LOC107750697,LOC107698289,LOC107570676,LOC107574826 coding upstream 86733 1030351 ~ 1036117 (+)
wdr77 wdr77 coding upstream 99989 1017009 ~ 1022861 (+)
camk1ga camk1ga,LOC107750693,LOC107667631,LOC107698298,LOC107570679 coding upstream 122463 989338 ~ 1000387 (+)
si:ch73-352p18.4 LOC107667632,LOC107750694,LOC107570681,LOC107710805 coding upstream 133643 984839 ~ 989207 (+)
LOC122328116 NA coding downstream 9541 1134471 ~ 1136105 (+)
LOC122327901 LOC107745441 coding downstream 36413 1161343 ~ 1521207 (+)
LOC122328021 LOC568664 coding downstream 97766 1222696 ~ 1228583 (+)
LOC122328020 LOC568664 coding downstream 149504 1274434 ~ 1285114 (+)
LOC122327924 LOC107566706 coding downstream 187083 1312013 ~ 1346551 (+)
G148219 NA non-coding upstream 71940 1050685 ~ 1050910 (+)
G148033 NA non-coding upstream 111214 1009390 ~ 1011636 (+)
G148002 NA non-coding upstream 229627 892589 ~ 893223 (+)
LOC122328050 NA non-coding upstream 293735 825151 ~ 829115 (+)
G147984 NA non-coding upstream 373203 749048 ~ 749647 (+)
G148226 NA non-coding downstream 58590 1183520 ~ 1190524 (+)
LOC122328044 NA non-coding downstream 211188 1336118 ~ 1338916 (+)
G148251 NA non-coding downstream 215307 1340237 ~ 1359295 (+)
G148255 NA non-coding downstream 253969 1378899 ~ 1428291 (+)
LOC122328038 NA non-coding downstream 276915 1401845 ~ 1406107 (+)
G148214 wdr77 other upstream 106183 1015779 ~ 1016667 (+)
G147888 LOC107732183,LOC107723096,LOC107572363,LOC107698292,LOC107750676,LOC107656899 other upstream 328844 791234 ~ 794006 (+)
G147985 LOC107723118,LOC107656907,LOC107572366 other upstream 371341 750279 ~ 751509 (+)
G147896 NA other upstream 396083 726400 ~ 726767 (+)
G147937 NA other upstream 463236 653880 ~ 659614 (+)
G148233 LOC107571167,LOC107662825,LOC107663547 other downstream 556 1125486 ~ 1127230 (+)
LOC122327965 NA other downstream 12787 1137717 ~ 1148802 (+)
G148222 NA other downstream 254361 1379291 ~ 1384847 (+)
LOC122328040 NA other downstream 497062 1621992 ~ 1880883 (+)
G148295 NA other downstream 499542 1624472 ~ 1625190 (+)

Expression


Co-expression Network