RNA id: XM_043223674.1


Basic Information

Item Value
RNA id XM_043223674.1
length 1615
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC122327961
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1122850 ~ 1124930 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAACGTTTGTTCTTCCGGACCGGCCAGCCGCTGCTGTTAGTCGTGTCGAAATAGCTAATATGTTACTTTACTGGTGATACTTGTCATAATCAGGATACGCGTTCGGAACGGATAACGTTTAACTGTCTGTTGTAGCCGCGCGAGGTGGAACGCATATATCGCTGAAACTGACAGCAAAACGTAAACATCTCGATGTAAAATGCGCCGATGTCCTGCTGATCGTAAATCACTCCGTATGGAGAGACCGCACGATGTCGTTAACTACATCAGCGGTCATTACTTCGCTTTTTAACATGACCGCGACAGTTTATAGCGACGTTGTTAACGCTGTTCTCAGAACAAAAGGCAGCAGGGATGTATCTGGCCTGTCATACCTCTGGGTTAAGGGGTGAAACgcaaaaataatagtttttaagagaaaactgaaaacatgatCCATAATCTCGCAGTATGAAACCCAACGAAGATACTGAAGGACAAAGAGCTTATGTTCATTTAGGTCTGATGGACGTAAAAGAGGAACGTGAAGACTCGGATGAGGTGGAGGAGCAACGTTATCACTCCATCGCCGATGAAGAACCTTTGACCCTCACGCAAAAAACAACCAAAGTCAAGAAGTCTTACATCTGCCCTCAGTGCGGGAAGTGTTTTGCAGGTAAATCGCGACTCGAGCGCCACATAagaatccacaccggagagaagcctttcgcGTGTTTTGTGTGCGCCAAGAGTTTCGCGTGTAAAGAACGACTCGACAGGCACATAaaaatccacaccggagagaagcccttcaCGTGCGAGTGGTGCGGAAAGCGCTTGGCGTGCAAAACGAGGCTCAAGAGGCACGTGATAACCCACACTGGGAAAAAGCCTTACGCGTGCTTGCATTGCGAAAGGAGCTTCACGACGAACACCAACCTGCAGCGGCACGTCAAactccacaccggagagaggcCGCACACGTGCCAagagtgcgggaagagcttcataCGCAAGGAAAAGCTCCGCTTTCACATGACGATCCACACTGGAGAGCGGCCTTACAGTTGCGAACAATGTGGGAAGAGTTTCCGACACGTCAACGGCCTCAAAGATCACCAGCTCTCTCACGCCGCCGAACGGTCTTTTAGCTGTGATCAATGCGGTAAGGATTTCATTACTGCGTCGGCGCTGAAGAGACACCTGAGAGTTCATTCGGGTGAGAAGCCTTTCTTGTGCTCTCTCTGCGGAAAGAGTTTCGCGCGAGTGGACTGCTTTAAAAGGCATCAGGAGGTCCATAGCGGTGTGAAGGATCACGTGTGTTATGAATGCGGCAAGGCTTTTATTACCTCCGACCAGCTCAAGCAGCACCAGAGGATTCACACGGGAGAGAAACCGTACAAGTGCTCGCTTTGTGGGAAGGGTTTCGCTCAGTCGCCGCACCTGAAAGCGCACGAGAAAAGCCACACCGCTGAGAGCCTGGTAATAAGCGATCAAATTATCTACTGATTCACACGGAAAATGCGCGATTCGAAGGTACCTCGCGAATCTGAATCCCGTAAAAGGATTCAACCAAACCTTTTGTTTCAACGTTGCATCTGAATACAgcaaataaactgttttatcaCCAGGTC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219024 lncRNA upstream 71940 1050685 ~ 1050910 (+) True G148219
TU218746 lncRNA upstream 111214 1009390 ~ 1011636 (+) True G148033
TU218713 lncRNA upstream 229627 892589 ~ 893223 (+) True G148002
XR_006247765.1 lncRNA upstream 293735 825151 ~ 829115 (+) True LOC122328050
TU218691 lncRNA upstream 373203 749048 ~ 749647 (+) True G147984
TU219058 lncRNA downstream 58590 1183520 ~ 1190524 (+) True G148226
XR_006247759.1 lncRNA downstream 211188 1336118 ~ 1338916 (+) True LOC122328044
TU219094 lncRNA downstream 215307 1340237 ~ 1359295 (+) True G148251
TU219099 lncRNA downstream 253969 1378899 ~ 1428291 (+) True G148255
XR_006247753.1 lncRNA downstream 276915 1401845 ~ 1405144 (+) True LOC122328038
XM_043223825.1 mRNA upstream 1184 1113164 ~ 1121666 (+) True LOC122328115
XM_043223723.1 mRNA upstream 86733 1030351 ~ 1036117 (+) True si:ch211-103a14.5
XM_043223688.1 mRNA upstream 99989 1017009 ~ 1022861 (+) False wdr77
XM_043223687.1 mRNA upstream 99989 1017011 ~ 1022861 (+) True wdr77
XM_043223662.1 mRNA upstream 122463 991165 ~ 1000387 (+) False camk1ga
XM_043223827.1 mRNA downstream 9541 1134471 ~ 1136105 (+) True LOC122328116
XM_043223685.1 mRNA downstream 12787 1137717 ~ 1141142 (+) False LOC122327965
XM_043223567.1 mRNA downstream 36413 1161343 ~ 1521207 (+) True LOC122327901
XM_043223745.1 mRNA downstream 97766 1222696 ~ 1228583 (+) True LOC122328021
XM_043223744.1 mRNA downstream 149504 1274434 ~ 1285114 (+) True LOC122328020
TU219018 other upstream 106183 1015779 ~ 1016667 (+) True G148214
TU218551 other upstream 328844 791234 ~ 794006 (+) True G147888
TU218692 other upstream 371341 750279 ~ 751509 (+) True G147985
TU218561 other upstream 396083 726400 ~ 726767 (+) True G147896
TU218610 other upstream 463236 653880 ~ 659614 (+) True G147937
TU219065 other downstream 556 1125486 ~ 1127230 (+) False G148233
TU219066 other downstream 671 1125601 ~ 1127230 (+) True G148233
XR_006247738.1 other downstream 12787 1137717 ~ 1148802 (+) True LOC122327965
XR_006247739.1 other downstream 12787 1137717 ~ 1141809 (+) False LOC122327965
TU219053 other downstream 254361 1379291 ~ 1384847 (+) True G148222

Expression Profile