RNA id: TU218561


Basic Information

Item Value
RNA id TU218561
length 293
RNA type TUCP
GC content 0.59
exon number 2
gene id G147896
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 726400 ~ 726767 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAAATAAAGCGGTAATAATGAAGGTCACCTGTCGGAGCGAGGCGGCGAAGGCCTCATGGGAACTGTTGAGTCTGGTCCTGAACTGAGAGCAGATGCTCTTGGCCAGTTTAGCGGCGCTCAGGCTCTCGATGGCGTCCTGCGCGACCTTGCGCTTCCACTCGGCCGTGATGGACGGAGGGTTGACCCACGTGATGCGGTGGATGATCTGTTGATCTGCTCCCAGAAGAGCCTGGTGACGGAGGAGCCCGAGTGGAAGGTGACCTCCACGTTATACGCCGCGTTCAGGATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218563 lncRNA upstream 154 724669 ~ 726246 (+) True G147898
TU218688 lncRNA upstream 3817 718919 ~ 722583 (+) True G147982
TU218611 lncRNA upstream 149019 559745 ~ 577381 (+) True G147938
TU218604 lncRNA upstream 162232 562796 ~ 564168 (+) False mfap2
TU218633 lncRNA upstream 164956 559206 ~ 561444 (+) False mfap2
TU218691 lncRNA downstream 22281 749048 ~ 749647 (+) True G147984
XR_006247765.1 lncRNA downstream 98384 825151 ~ 829115 (+) True LOC122328050
TU218713 lncRNA downstream 165822 892589 ~ 893223 (+) True G148002
TU218746 lncRNA downstream 282623 1009390 ~ 1011636 (+) True G148033
TU219024 lncRNA downstream 323918 1050685 ~ 1050910 (+) True G148219
XM_043223565.1 mRNA upstream 8016 682162 ~ 718384 (+) True celsr2
XM_043223566.1 mRNA upstream 8016 682163 ~ 718384 (+) False celsr2
XM_043223699.1 mRNA upstream 47259 667596 ~ 679141 (+) False capzb
XM_043223698.1 mRNA upstream 47340 667553 ~ 679060 (+) True capzb
XM_043223593.1 mRNA upstream 95900 623752 ~ 630500 (+) True LOC122327913
XM_043223629.1 mRNA downstream 12994 739761 ~ 748409 (+) True nuak2
XM_043223630.1 mRNA downstream 15593 742360 ~ 748409 (+) False nuak2
XM_043223718.1 mRNA downstream 31948 758715 ~ 761528 (+) True med20
XM_043223618.1 mRNA downstream 34902 761669 ~ 768537 (+) True usp49
XM_043223740.1 mRNA downstream 61696 788463 ~ 791147 (+) True pth4
TU218610 other upstream 66786 653880 ~ 659614 (+) True G147937
TU218651 other upstream 103033 622483 ~ 623367 (+) True G147956
TU218544 other upstream 300934 423001 ~ 425466 (+) True G147885
TU218530 other upstream 368088 357928 ~ 358312 (+) True G147874
TU218528 other upstream 377220 348259 ~ 349180 (+) True G147872
TU218692 other downstream 23512 750279 ~ 751509 (+) True G147985
TU218551 other downstream 64467 791234 ~ 794006 (+) True G147888
TU219018 other downstream 289012 1015779 ~ 1016667 (+) True G148214
TU219065 other downstream 398719 1125486 ~ 1127230 (+) False G148233
TU219066 other downstream 398834 1125601 ~ 1127230 (+) True G148233

Expression Profile