med20 (med20)


Basic Information

Item Value
gene id med20
gene name med20
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 758715 ~ 761528 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223718.1
TCAAGCCTGCAGATAACTGCAAACATGTCTGTGTTGTCCGATTAAAGTTTTTTGCTTCACCCGATTTTGTGTTAATAACGAAAGCTGCATTGACCCGGAAGTAAACACTGGTTCGCGGAAGTGTACTGTGAAGAAATGGGTGTAACGTGtgtgtgtcagGTGCCGGTGGCGGAGGGGAAGAGCGTGCAGCAGACCGTGGACATGCTTCATAAGAAGCTGGAGCAGCTGGGAGCCGTTAAACAGGGTAACTTCTGGGTGGACTGTGAGACGTACCACGCCACGGGGAACTCCACCGgccAGCCGACGAAGCTGCTGTATGTGATGCACAACTCGGAGACGCCGCTGAGCTGCATGGCTCTGTTCGAGGGCGGCCCGGGCCTCACCGCCGACGCCAACTTCGACGTCCTGATGGTCAAACTCAAGAGTCACTTCCAGAACGCCAAGGGACACAAGGTGGAGTCTCGCGGCACGCGCTACCGCTACTGCGACTTCCTGGTGAAGATCGGCACCGTGGCCATGAGCTCCAGCGCCAGGGGCATCTCCGTCGAGGTGGAGTACTGCGCCTGCGTGATCCCCGGGGACTGCTGGAACCTGATGAAGGAGTTCCTGCAGAGCTTCCTGGGGCCTCACGCTCCCGAGCTGCCGGCGGTGTTCTCCGGGAGGAGCGAGGGCCTGTACGCGCCGCTGGACTGCACCGACACCATGAGCCAGTACCTGGAGCTCTTCGGGAGAGTGCGCAAGCAGCAGGTGCTCCCGGGCAGCGGCGTCCGCTGAGAGACTGCCTTCACTCCTCTGGAGCAAACCACTCGTTTTTGTATCAAAACAAAAGGTTTCAGTGGCATTAACATCACTTTCATTCATTTCTACATGAACTGTTCCCTACTGCCCAACAATTTCACTCAATTCTCgattctttaaacaaaaactcgTCCCTATTCATACTCTATTAACTTAAATGCCTCCAACACTAGcttgctctattctttttctatacAGTctgtttactttctttttttttgtaataaaataaagcctTTCTACATGCA

Function

symbol description
med20 Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED20 (mediator complex subunit 20).

NR:

description
mediator of RNA polymerase II transcription subunit 20

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K13528 MED20; mediator of RNA polymerase II transcription subunit 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223718.1 True 1046 mRNA 0.54 4 758715 761528

Neighbor

gene id symbol gene type direction distance location
nuak2 nuak2,LOC107722940,LOC107750672,LOC107572355,LOC107690560 coding upstream 10306 739761 ~ 748409 (+)
celsr2 celsr2,LOC107690562,LOC107723072,LOC107750703,LOC107656894 coding upstream 40331 682162 ~ 718384 (+)
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding upstream 79574 667553 ~ 679141 (+)
LOC122327913 NA coding upstream 128215 623752 ~ 630500 (+)
LOC122327960 ora4,LOC107722985,LOC107656911,LOC107573771,LOC103385863 coding upstream 153206 602443 ~ 605509 (+)
usp49 usp49,LOC107722889,LOC107572367,LOC107656903,LOC107690537,LOC107569748 coding downstream 141 761669 ~ 768537 (+)
pth4 LOC107723108,LOC107750679 coding downstream 26935 788463 ~ 791147 (+)
elf3 elf3,LOC107572362,LOC107569764,LOC107656900 coding downstream 37280 798808 ~ 801946 (+)
gpr37l1a LOC107722870,LOC107671519,LOC107698308,LOC107569763,LOC107750705 coding downstream 58871 820399 ~ 824853 (+)
c22h6orf89 LOC107575232,LOC107671520,LOC107750683,LOC107698307,LOC107569747,LOC107723024,LOC107578153 coding downstream 72546 834074 ~ 839760 (+)
G147984 NA non-coding upstream 9068 749048 ~ 749647 (+)
G147891 spen,LOC107571566,LOC107719036 non-coding upstream 29641 497725 ~ 729074 (+)
G147898 NA non-coding upstream 32469 724669 ~ 726246 (+)
G147982 NA non-coding upstream 36132 718919 ~ 722583 (+)
G147938 NA non-coding upstream 181334 559745 ~ 577381 (+)
LOC122328050 NA non-coding downstream 63623 825151 ~ 829115 (+)
G148002 NA non-coding downstream 131061 892589 ~ 893223 (+)
G148033 NA non-coding downstream 247862 1009390 ~ 1011636 (+)
G148219 NA non-coding downstream 289157 1050685 ~ 1050910 (+)
G148226 NA non-coding downstream 421992 1183520 ~ 1190524 (+)
G147985 LOC107723118,LOC107656907,LOC107572366 other upstream 7206 750279 ~ 751509 (+)
G147896 NA other upstream 31948 726400 ~ 726767 (+)
G147937 NA other upstream 99101 653880 ~ 659614 (+)
G147956 NA other upstream 135348 622483 ~ 623367 (+)
mfap2 mfap2 other upstream 194494 559004 ~ 564221 (+)
G147888 LOC107732183,LOC107723096,LOC107572363,LOC107698292,LOC107750676,LOC107656899 other downstream 29706 791234 ~ 794006 (+)
G148214 wdr77 other downstream 254251 1015779 ~ 1016667 (+)
G148233 LOC107571167,LOC107662825,LOC107663547 other downstream 363958 1125486 ~ 1127230 (+)
LOC122327965 NA other downstream 376189 1137717 ~ 1148802 (+)
G148222 NA other downstream 617763 1379291 ~ 1384847 (+)

Expression


Co-expression Network