capzb (capzb,LOC105897928,LOC106565651,LOC106583096)


Basic Information

Item Value
gene id capzb
gene name capzb,LOC105897928,LOC106565651,LOC106583096
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 667553 ~ 679141 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223698.1
CGCCCCTCCCCCGCCGGAGCCCGGATGAGGAAGTGAGCGCTGACAGGGCTGGGTTCCGTCAGAGAGTCGAAGCCGAACCGCGTCCAGACCGACCCAAACAGAGCCGCACTGCGAACCGAACCCGCCTCCGCCGCCGCCTTCAGTCCCGCAGACACCGCCACCGACCGCCGCAGACATGAACGAGCAGCAGCTGGACTGTGCACTGGATCTGATGAGACGTCTGCCTCCACAGCAGATCGAGAAGAACCTCAGCGACCTCATCGACctggtgccCAGTCTGTGTGAGGACCTGCTGTCGTCGGTGGATCAGCCGCTGAAGATCGCTCGTGATAAAGTTGTGGGTAAAGACTATCTGCTGTGTGACTATAACCGTGATGGAGACTCCTACAgATCCCCCTGGAGTAATAAATACGAGCCTCCGATCGACGACGGAGCCATGCCCTCGGCTCGCCTGCGCAAGCTGGAGGTGGAGGCCAACAACGCCTTCGACCAATACAGAGACCTGTACTTCGAGGGCGGGGTTTCCTCCGTGTATCTGTGGGATCTGGACCACGGCTTCGCCGGAGTCATCCTCATCAAGAAAGCTGGAGACGGCTCCAAGAAGATCAAGGGATGCTGGGACTCCATCCATGTGGTGGAGGTGCAGgagaaGTCCAGCGGGCGTACGGCTCACTATAAGCTCACGTCGACCGTCATGCTGTGGCTGCAGACCACTAAAACCGGCTCGGGCACCATGAACCTGGGCGGCAGTCTCACCCGACAGaTGGAGAAAGACGAGACGGTCAGTGAATCCTCTCCTCACATCGCTAACATCGGCCGCCTGGTGGAggacaTGGAGAACAAGATCCGCTCCACTCTCAATGAGATCTACTTCGGCAAGACCAAGGACATCGTGAATGGCCTGAGATCTATCGAGTCTCTCCCTGATAATCAAAAGTACCGTCAGCTGCAGCGGGAGCTCTCTCAGGTTCTGACCCAGCGTCAGATCTAcattgattaggGAGCGTTCAGACGCTGGCGGATAAATCGAAGCAGGAGGCTCTGAAGAACGACCTGATGCACGCTCTTAGCCAACGCAGCAAACAGCAGAGCTAGAGAcgagtgtctctctctcactctctcactctttctctctctct
>XM_043223699.1
CAGGGCTGGGTTCCGTCAGAGAGTCGAAGCCGAACCGCGTCCAGACCGACCCAAACAGAGCCGCACTGCGAACCGAACCCGCCTCCGCCGCCGCCTTCAGTCCCGCAGACACCGCCACCGACCGCCGCAGACATGAACGAGCAGCAGCTGGACTGTGCACTGGATCTGATGAGACGTCTGCCTCCACAGCAGATCGAGAAGAACCTCAGCGACCTCATCGACctggtgccCAGTCTGTGTGAGGACCTGCTGTCGTCGGTGGATCAGCCGCTGAAGATCGCTCGTGATAAAGTTGTGGGTAAAGACTATCTGCTGTGTGACTATAACCGTGATGGAGACTCCTACAgATCCCCCTGGAGTAATAAATACGAGCCTCCGATCGACGACGGAGCCATGCCCTCGGCTCGCCTGCGCAAGCTGGAGGTGGAGGCCAACAACGCCTTCGACCAATACAGAGACCTGTACTTCGAGGGCGGGGTTTCCTCCGTGTATCTGTGGGATCTGGACCACGGCTTCGCCGGAGTCATCCTCATCAAGAAAGCTGGAGACGGCTCCAAGAAGATCAAGGGATGCTGGGACTCCATCCATGTGGTGGAGGTGCAGgagaaGTCCAGCGGGCGTACGGCTCACTATAAGCTCACGTCGACCGTCATGCTGTGGCTGCAGACCACTAAAACCGGCTCGGGCACCATGAACCTGGGCGGCAGTCTCACCCGACAGaTGGAGAAAGACGAGACGGTCAGTGAATCCTCTCCTCACATCGCTAACATCGGCCGCCTGGTGGAggacaTGGAGAACAAGATCCGCTCCACTCTCAATGAGATCTACTTCGGCAAGACCAAGGACATCGTGAATGGCCTGAGGAGCGTTCAGACGCTGGCGGATAAATCGAAGCAGGAGGCTCTGAAGAACGACCTGATGCACGCTCTTAGCCAACGCAGCAAACAGCAGAGCTAGAGAcgagtgtctctctctcactctctcactctttctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc

Function

symbol description
capzb Predicted to enable actin filament binding activity. Acts upstream of or within muscle cell development and neural crest cell migration. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of F-actin capping protein complex. Is expressed in fin bud; head; pharyngeal arch; and somite. Used to study cleft palate. Orthologous to human CAPZB (capping actin protein of muscle Z-line subunit beta).

NR:

description
PREDICTED: F-actin-capping protein subunit beta isoform X1

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0008290 F-actin capping protein complex cellular_component
GO:0071203 WASH complex cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K10365 CAPZB; capping protein (actin filament) muscle Z-line, beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223698.1 True 1139 mRNA 0.58 10 667553 679060
XM_043223699.1 False 1082 mRNA 0.57 9 667596 679141

Neighbor

gene id symbol gene type direction distance location
LOC122327913 NA coding upstream 37053 623752 ~ 630500 (+)
LOC122327960 ora4,LOC107722985,LOC107656911,LOC107573771,LOC103385863 coding upstream 62044 602443 ~ 605509 (+)
sdhb sdhb,LOC107656920,LOC107573137,LOC105927147 coding upstream 108682 555883 ~ 558871 (+)
prkar2ab prkar2a coding upstream 172404 484527 ~ 495149 (+)
slc25a20 slc25a20 coding upstream 183514 477387 ~ 484039 (+)
celsr2 celsr2,LOC107690562,LOC107723072,LOC107750703,LOC107656894 coding downstream 3021 682162 ~ 718384 (+)
nuak2 nuak2,LOC107722940,LOC107750672,LOC107572355,LOC107690560 coding downstream 60620 739761 ~ 748409 (+)
med20 med20 coding downstream 79574 758715 ~ 761528 (+)
usp49 usp49,LOC107722889,LOC107572367,LOC107656903,LOC107690537,LOC107569748 coding downstream 82528 761669 ~ 768537 (+)
pth4 LOC107723108,LOC107750679 coding downstream 109322 788463 ~ 791147 (+)
G147938 NA non-coding upstream 90172 559745 ~ 577381 (+)
G147923 NA non-coding upstream 113855 552946 ~ 553698 (+)
G147942 slc25a34 non-coding upstream 136019 530567 ~ 531534 (+)
G147939 NA non-coding upstream 144831 522459 ~ 522722 (+)
G147905 NA non-coding upstream 196008 471068 ~ 471545 (+)
G147982 NA non-coding downstream 39778 718919 ~ 722583 (+)
G147898 NA non-coding downstream 45528 724669 ~ 726246 (+)
G147984 NA non-coding downstream 69907 749048 ~ 749647 (+)
LOC122328050 NA non-coding downstream 146010 825151 ~ 829115 (+)
G148002 NA non-coding downstream 213448 892589 ~ 893223 (+)
G147937 NA other upstream 7939 653880 ~ 659614 (+)
G147956 NA other upstream 44186 622483 ~ 623367 (+)
mfap2 mfap2 other upstream 103332 559004 ~ 564221 (+)
G147885 LOC107575389,LOC107705004,LOC107681327,LOC107571573,LOC106914938,LOC103464607,LOC103138443,LOC108443910 other upstream 242087 423001 ~ 425466 (+)
G147874 ns:zf-e68,LOC100653413,LOC107737926 other upstream 309241 357928 ~ 358312 (+)
G147896 NA other downstream 47259 726400 ~ 726767 (+)
G147985 LOC107723118,LOC107656907,LOC107572366 other downstream 71138 750279 ~ 751509 (+)
G147888 LOC107732183,LOC107723096,LOC107572363,LOC107698292,LOC107750676,LOC107656899 other downstream 112093 791234 ~ 794006 (+)
G148214 wdr77 other downstream 336638 1015779 ~ 1016667 (+)
G148233 LOC107571167,LOC107662825,LOC107663547 other downstream 446345 1125486 ~ 1127230 (+)

Expression


Co-expression Network