sdhb (sdhb,LOC107656920,LOC107573137,LOC105927147)


Basic Information

Item Value
gene id sdhb
gene name sdhb,LOC107656920,LOC107573137,LOC105927147
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 555883 ~ 558871 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223696.1
CGTTAGTGGTCACTAGGGGCGCCGTCTCGAGCGTGTTTTCCCGCGCGGTGCATTGTGGGCCGCCGGAGGAGCGCAGGGTCAGACAGACGCGATCATGGCCGCCGTGTGTTTCTCCTTGAGCCGCTGCTGCGCCGCCGGGCACCGAGCCTCGGTCACGgcgGTGCGCTTCGCTCAGACGGCGTCCGCGGTGCAGCCCAGGATCAAGACCTTCCAGATCTACCGCTGGGATCCGGACCGCGCCGGGGACAAGCCTCGCATGCAGACCTACGAGATCGACCTGAACACctgcGGGCCCATGGTTCTGGACGCTCTCATCAAGATCAAGAACGAGATGGACGGCACGCTGACCTTCAGGCGCTCCTGCAGAGAGGGGATCTGCGGGTCGTGTGCCATGAACATCAACGGAGGAAACACTCTGGCCTGTCTGAACAAAATCGACACGAACACCGGCAAGGTGACGAAGATCTACCCGCTGCCGCACATGTACGTGGTGAAAGACCTGGTGCCGGACATGAGTAACTTCTACGCTCAGTACAAGTCCATCGAGCCCTACCTGAAGAAGAAGGACGAGTCCAGACAGGGCCAGGAGCAGTACCTGCAGAGCGTGGAGGACCGGCAGAAACTGGTAGCTGATGAGCCcggacacGACGGGCTGTACGAGTGTATCCTGTGCGCCTGCTGCAGCACCAGCTGTCCCAGCTACTGGTGGAACGCAGACAAGTACCTGGGTCCAGCCGTGCTCATGCAGGCGTACCGCTGGATGATCGACTCTCGTGATGAATACACCGAGGAGAGGCTCTCCAAGCTGCAGGACCCCTTCTCTCTGTACCGCTGTCACACCATCATGAACTGCACCAGAACCTGCCCGAAGGGCCTGAATCCAGGCAAAGCCATCGCAGAGATCAAGAAGATGATGGCCACCTACAAAGAGAAGAAGACTGCGTCTGCGTGAAGATGGACAGTCCTGTGAAGACCAgcagctctctcacacacacacacacacacacactcttccaCACACACTCTAGACAGGACACAGATCATATGATATTTCTGCTCATCACTCCATAAAGAGACGTGTTTGTTGTTTCAGAGTTTGTCTGGAGATCtgtatattcaataaataaatgcttgtaGAGCAAGGTTTTCTTCAGCAGTCAGAAGAGTCTTGTctcatgttaaaataataataaagtgattATAAATGCAA
>XM_043223697.1
CGTTAGTGGTCACTAGGGGCGCCGTCTCGAGCGTGTTTTCCCGCGCGGTGCATTGTGGGCCGCCGGAGGAGCGCAGGGTCAGACAGACGCGATCATGGCCGCCGTGTGTTTCTCCTTGAGCCGCTGCTGCGCCGCCGGGCACCGAGCCTCGGTCACGgcgGTGCGCTTCGCTCAGACGGCGTCCGCGGTGCAGCCCAGGATCAAGACCTTCCAGATCTACCGCTGGGATCCGGACCGCGCCGGGGACAAGCCTCGCATGCAGACCTACGAGATCGACCTGAACACctgcGGGCCCATGGTTCTGGACGCTCTCATCAAGATCAAGAACGAGATGGACGGCACGCTGACCTTCAGGCGCTCCTGCAGAGAGGGGATCTGCGGGTCGTGTGCCATGAACATCAACGGAGGAAACACTCTGGCCTGTCTGAACAAAATCGACACGAACACCGGCAAGGTGACGAAGATCTACCCGCTGCCGCACATGTACGTGGTGAAAGACCTGGTGCCGGACATGAGTAACTTCTACGCTCAGTACAAGTCCATCGAGCCCTACCTGAAGAAGAAGGACGAGTCCAGACAGGGCCAGGAGCAGTACCTGCAGAGCGTGGAGGACCGGCAGAAACTGGACGGGCTGTACGAGTGTATCCTGTGCGCCTGCTGCAGCACCAGCTGTCCCAGCTACTGGTGGAACGCAGACAAGTACCTGGGTCCAGCCGTGCTCATGCAGGCGTACCGCTGGATGATCGACTCTCGTGATGAATACACCGAGGAGAGGCTCTCCAAGCTGCAGGACCCCTTCTCTCTGTACCGCTGTCACACCATCATGAACTGCACCAGAACCTGCCCGAAGGGCCTGAATCCAGGCAAAGCCATCGCAGAGATCAAGAAGATGATGGCCACCTACAAAGAGAAGAAGACTGCGTCTGCGTGAAGATGGACAGTCCTGTGAAGACCAgcagctctctcacacacacacacacacacacactcttccaCACACACTCTAGACAGGACACAGATCATATGATATTTCTGCTCATCACTCCATAAAGAGACGTGTTTGTTGTTTCAGAGTTTGTCTGGAGATCtgtatattcaataaataaatgcttgtaGAGCAAGGTTTTCTTCAGCAGTCAGAAGAGTCTTGTctcatgttaaaataataataaagtgattATAAATGCAA

Function

symbol description
sdhb Predicted to enable iron-sulfur cluster binding activity and ubiquinone binding activity. Predicted to be involved in aerobic respiration and respiratory electron transport chain. Predicted to act upstream of or within tricarboxylic acid cycle. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Predicted to be active in mitochondrial membrane. Is expressed in several structures, including alar plate midbrain region; immature eye; optic tectum; pronephric duct; and segmental plate. Human ortholog(s) of this gene implicated in Carney-Stratakis syndrome; gastrointestinal stromal tumor; mitochondrial complex II deficiency; paraganglioma; and pheochromocytoma. Orthologous to human SDHB (succinate dehydrogenase complex iron sulfur subunit B).

NR:

description
succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006810 transport biological_process
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) cellular_component
GO:0008177 succinate dehydrogenase (ubiquinone) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function
GO:0051538 3 iron, 4 sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0048039 ubiquinone binding molecular_function

KEGG:

id description
K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223696.1 True 1210 mRNA 0.56 8 555883 558871
XM_043223697.1 False 1189 mRNA 0.56 8 555883 558871

Neighbor

gene id symbol gene type direction distance location
prkar2ab prkar2a coding upstream 60734 484527 ~ 495149 (+)
slc25a20 slc25a20 coding upstream 71844 477387 ~ 484039 (+)
LOC122327927 nckipsd coding upstream 78684 472214 ~ 477199 (+)
zgc:112334 zgc:112334,LOC107681331,LOC107573142 coding upstream 85528 459922 ~ 470355 (+)
LOC122327999 zgc:153713,LOC107705003,LOC108254710,LOC107737929,LOC107681330,LOC105904931,LOC106583462 coding upstream 102085 450828 ~ 453798 (+)
LOC122327960 ora4,LOC107722985,LOC107656911,LOC107573771,LOC103385863 coding downstream 43572 602443 ~ 605509 (+)
LOC122327913 NA coding downstream 64881 623752 ~ 630500 (+)
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding downstream 108682 667553 ~ 679141 (+)
celsr2 celsr2,LOC107690562,LOC107723072,LOC107750703,LOC107656894 coding downstream 123291 682162 ~ 718384 (+)
nuak2 nuak2,LOC107722940,LOC107750672,LOC107572355,LOC107690560 coding downstream 180890 739761 ~ 748409 (+)
G147923 NA non-coding upstream 2185 552946 ~ 553698 (+)
G147942 slc25a34 non-coding upstream 24349 530567 ~ 531534 (+)
G147939 NA non-coding upstream 33161 522459 ~ 522722 (+)
G147905 NA non-coding upstream 84338 471068 ~ 471545 (+)
G147897 NA non-coding upstream 96365 457710 ~ 459518 (+)
G147938 NA non-coding downstream 874 559745 ~ 577381 (+)
G147982 NA non-coding downstream 160048 718919 ~ 722583 (+)
G147898 NA non-coding downstream 165798 724669 ~ 726246 (+)
G147984 NA non-coding downstream 190177 749048 ~ 749647 (+)
LOC122328050 NA non-coding downstream 266280 825151 ~ 829115 (+)
G147868 zgc:66156,wu:fd14a01,LOC103138443,LOC103360557,LOC103360549,LOC107705004,LOC107681327,LOC107575389,LOC107571573,LOC108261437,LOC108261476 other upstream 118538 345925 ~ 437345 (+)
mfap2 mfap2 other downstream 133 559004 ~ 564221 (+)
G147956 NA other downstream 63612 622483 ~ 623367 (+)
G147937 NA other downstream 95009 653880 ~ 659614 (+)
G147896 NA other downstream 167529 726400 ~ 726767 (+)
G147985 LOC107723118,LOC107656907,LOC107572366 other downstream 191408 750279 ~ 751509 (+)

Expression


Co-expression Network