slc25a20 (slc25a20)


Basic Information

Item Value
gene id slc25a20
gene name slc25a20
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 477387 ~ 484039 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223694.1
AAACGGTTCCGGGTGTGTATGTGGGTGAAAGGTCGCGTTTGAAACCGAGGGGACTCAGAAATCACCTGTCCGTCCGTCCTGAGTGAGCTGAGACCGGACCGAGCTGAACATGTCCAAGCAGCAGCAGATCAGTCCCGTGAAGAACTTCTTCGCCGGAGGTTTCGGGGGAGTGTGTTTAGTGTTCGCCGGACACCCGCTGGACACCATCAAaGTTCGACTGCAGACGCAGCCCCTGCCCGGTCCAGGAGAGACTGCTCTGTACCGCGGGACGCTCGACTGCTTCAGGAAAACGCTGGCCAAAGAGggGGTCCGAGGGCTGTATAAGGGCATGGCGGCGCCCATCATCGGAGTCACGCCCATGTTCGCCATCTGCTTCTTCGGCTTCGGACTCGGCAAGAAACTGCAGCAGAAAACCCCAGACGACATCCTGACgTATCCACAGCTGTTTGCCGCAGGGATGCTGTCAGGAGTCTTCACTACAGCCATCATGGCTCCTGGAGAGAGGATCAAGTGTCTGCTGCAGATCCAGGCGGCGTCGGGGAAGGTGAAGTACACGGGACCAATGGACTGCGCCAAGCAGCTGTACAGAGAGAACGGCATCCGCGGCGTCTATAAAGGAACCGCTCTGACGCTCATGAGAGATGTGCCGGCCAGTGGGATGTACTTCATGACATACGAGTGGCTGAAGAACGCGCTCACGCCGGAGGGCAGGAGcccATCGGAGCTCAGTGTTCCCAGTGTGCTGTTTGCTGGTGGGATGGCGGGGATCTTTAACTGGGCCGTGGCGATTCCTCCAGACGTGCTGAAGTCTCGCTTCCAGACggCTCCAGAGGGCAAATATCCCAACGGCTTCCGGGACGTCCTGCGAGAGCTGATCCGGGAGGAGGGCATCGGCTCGCTCTATAAAGGCTTTAATGCAGTGATGCTGCGAGCGTTTCCAGCGCACGCGGCCTGTTTCCTGGGCTTTGAAGTGGCCATGAAGTTCCTGAACTGGCTTGCTCCAAATCTGTGATCCAGAGGAACCGGAGCGGATGTGAGACGCCGCACGGATCGATACGGATCGCTCCAGACAGACCGTAGCAAGTTAATGAATGTCTCGCTGCTTTATGATTTATTGGAGAGGATTTTAATCTGTAATAGTCAGTGCCTTATAACAGACTGTGAACCGATTTCTGCCTTCAGGGAAACTGaatgtttataatgtaaatCAAACCCTTTAACAGCTAGCAAACCTCTGTCTGTACATTAGCATTTATCCGTTTACAGCCTCGTCTGCCTTCAGCCCTCACGACAGGAATTACCTACACAGTCAAGGcctgttttaattgttttgttcattatgtttaattaacGTTATATCATCCACATcatgtacataaataaatgtatattgatCATTTTCGTATGATCTTGA

Function

symbol description
slc25a20 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in visceral fat. Human ortholog(s) of this gene implicated in carnitine-acylcarnitine translocase deficiency. Orthologous to human SLC25A20 (solute carrier family 25 member 20).

NR:

description
PREDICTED: mitochondrial carnitine/acylcarnitine carrier protein

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223694.1 True 1414 mRNA 0.53 9 477387 484039

Neighbor

gene id symbol gene type direction distance location
LOC122327927 nckipsd coding upstream 188 472214 ~ 477199 (+)
zgc:112334 zgc:112334,LOC107681331,LOC107573142 coding upstream 7032 459922 ~ 470355 (+)
LOC122327999 zgc:153713,LOC107705003,LOC108254710,LOC107737929,LOC107681330,LOC105904931,LOC106583462 coding upstream 23589 450828 ~ 453798 (+)
LOC122327972 ora1,LOC107571576,LOC107704997,LOC107719054 coding upstream 26566 449199 ~ 450821 (+)
LOC122328015 wu:fd14a01,LOC107575389,LOC107705004,LOC107571573,LOC108254796,LOC108443910 coding upstream 144849 321810 ~ 332538 (+)
prkar2ab prkar2a coding downstream 488 484527 ~ 495149 (+)
sdhb sdhb,LOC107656920,LOC107573137,LOC105927147 coding downstream 71844 555883 ~ 558871 (+)
LOC122327960 ora4,LOC107722985,LOC107656911,LOC107573771,LOC103385863 coding downstream 118404 602443 ~ 605509 (+)
LOC122327913 NA coding downstream 139713 623752 ~ 630500 (+)
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding downstream 183514 667553 ~ 679141 (+)
G147905 NA non-coding upstream 5842 471068 ~ 471545 (+)
G147897 NA non-coding upstream 17869 457710 ~ 459518 (+)
LOC122328039 NA non-coding upstream 34705 439437 ~ 442682 (+)
G147884 NA non-coding upstream 101063 375391 ~ 376324 (+)
G147883 LOC107685875,LOC107741456,LOC107667978,LOC107575420,LOC107561645,LOC107670352,LOC107575457,LOC107727338,LOC107566978 non-coding upstream 105547 371146 ~ 371840 (+)
G147891 spen,LOC107571566,LOC107719036 non-coding downstream 13686 497725 ~ 729074 (+)
G147939 NA non-coding downstream 38420 522459 ~ 522722 (+)
G147942 slc25a34 non-coding downstream 46528 530567 ~ 531534 (+)
G147923 NA non-coding downstream 68907 552946 ~ 553698 (+)
G147938 NA non-coding downstream 75706 559745 ~ 577381 (+)
G147868 zgc:66156,wu:fd14a01,LOC103138443,LOC103360557,LOC103360549,LOC107705004,LOC107681327,LOC107575389,LOC107571573,LOC108261437,LOC108261476 other upstream 40042 345925 ~ 437345 (+)
mfap2 mfap2 other downstream 74965 559004 ~ 564221 (+)
G147956 NA other downstream 138444 622483 ~ 623367 (+)
G147937 NA other downstream 169841 653880 ~ 659614 (+)
G147896 NA other downstream 242361 726400 ~ 726767 (+)
G147985 LOC107723118,LOC107656907,LOC107572366 other downstream 266240 750279 ~ 751509 (+)

Expression


Co-expression Network