elf3 (elf3,LOC107572362,LOC107569764,LOC107656900)


Basic Information

Item Value
gene id elf3
gene name elf3,LOC107572362,LOC107569764,LOC107656900
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 798808 ~ 801946 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223671.1
TATAAATTCATAAGTAGCAGGTGAATAACAAACCTCCTGACACTCTTAACAGTCAACCTCAAACCACGGAAGACAAACCCTTACTGACTGGATTATTACCTAACTAACACTTGCACTGGGATTTTACCTGGAAACCAAGCTGCCTTTAGCCACCACAACTGAATTGTCATGGCGTCAAGCGAACTTAGTCTTATTCTCAACAACGCAAATGCCAACCTGTACCCATCCGAACCGCAGCCCAACTTGTTAAGCATGACCACGCTGATGGGCAGAGCACCACATCTCTCAGAGATGACCTTCAGCAGTAACAACAGCGGCTCAATGGGCTCCTGGGACCTGGTGAACCCACAGATGTGGACCAGACATAATGTGCTGGAGTGGATCGGCTTTCATGTGGAGGAGGGCAGGTTCGATGCCAGTCTGCTGAACATGAACTACTGCAACATGGACGGGATTACGCTGTGCACAATGTCAAAAGAAACTTTGATGGGCATGTTCGGATCCATGCTTGGTGAACGGCTTCACCACAGTCTGGAGAACCTGAAGGCCAGATATGCTACTGACCTTTCCGAGACATGTCTGAGTGAATCCGAATTAGACCTACTGGACAACATACTGCAGAACTCGTTTCCCTACATGCACGGACCGAGTCTTGGTCCTCTTCTGGAAACGGTGGTGGTCCAGCCCTCAATCCCATCAGATAATTCGGAGAACAACTACAGCTACTTCGATGAGTACACCAGCCAGCTGACCCCAGAGAGCGACCACGGCTATGACTCGCTGACTGAGAGTTTTCAGAGTTCCCACACTGGTAGCTTCCTGAACCCAAGCTCACCTGATTCCAACAGCAGCGACTCCGACCCAGAATACTCAGAGATGCCTTACTCCACCAGCACTAAGAACTTTGTGAAACAAGAGTCAGGAGAGCCCAAAAAGAGAGGCAGAGGACGACCCCCAAAGTGCCAAAGTGAGGGATATGAACACTTCATTCAGTCCAAGAAAAGCAAACATGCTCCAAGAGGAACCCACCTTTGGGAGTTTATCCGGGACATCCTGATCCACCCGGAGAAGAACCAAGGTCTGATGAAATGGGAGGACCGCAGGGATGGCGTCTTCAAGTTCTTGAAGTCCGAAGCTGTTGCTCAGCTCTGGgggcagaagaagaagaacagcaGCATGACGTATGAGAAGCTCAGCCGAGCCATGAGGTATTACTACAAACGAGAGATTCTGGAGAGAGTGGATGGGCGCAGACTGGTCTACAAGTTTGGGAAGAACTCTACTGGATGGAGGGTTGAGGAGACCGGATACTGAAGTGGACCTGCCAGTCAAGCGTAGAGACTTTGAACTCCTGCTAATGAGGAACTAGAAGATCCTCTCTTTAGAAACGCACTCTTCCCAGAGGGAAAAGGTTTCACAGAAACTGTAAGCCAAAGTCTTGGCTAAAGTAGGTTTTATGAACCGGTAAAAGTGGCAGTAGTCTGAATCGAGAGGCACGCAGGCGTGGCCTGGATCAGATAGTATTGCTACAGCACTTAAAGACTAAATACTTTTCTACACAACGGTTGAGCTGTGAGAGAATGTAAAGCTTTATTAAGGCTCTTTGGTATTGGGAAATGAAGTTTTTTTGTGTAGGTATATTTGTCAGAGCAGAGTAACGGAAAAACGCTGGTGATATGAAGTGTCTGTAACGTTCACATTTGCTGTACTGTTTTGTtctactgtatataaatgtatgcataaactATATATTCTCTGTAATACTTGTCAATCAAGTACAAATCAGATATATCATTGAAGATTCTGCTCAATTTTTCTGTGATTTGTCAAGTCACTGGATAATACGTATGAGGTTTGCCTCTCAGATGTTATAACTATTATGTAAggcatttatttgctattttttgtaTACgtcttttctaaaaataaaatttctgattaaaagtaa

Function

symbol description
elf3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including inflammatory response; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in post-vent region. Orthologous to human ELF3 (E74 like ETS transcription factor 3).

NR:

description
ETS-related transcription factor Elf-3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09429 K09429, ELF3; E74-like factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223671.1 True 1948 mRNA 0.46 9 798808 801946

Neighbor

gene id symbol gene type direction distance location
pth4 LOC107723108,LOC107750679 coding upstream 7661 788463 ~ 791147 (+)
usp49 usp49,LOC107722889,LOC107572367,LOC107656903,LOC107690537,LOC107569748 coding upstream 30271 761669 ~ 768537 (+)
med20 med20 coding upstream 37280 758715 ~ 761528 (+)
nuak2 nuak2,LOC107722940,LOC107750672,LOC107572355,LOC107690560 coding upstream 50399 739761 ~ 748409 (+)
celsr2 celsr2,LOC107690562,LOC107723072,LOC107750703,LOC107656894 coding upstream 80424 682162 ~ 718384 (+)
gpr37l1a LOC107722870,LOC107671519,LOC107698308,LOC107569763,LOC107750705 coding downstream 18453 820399 ~ 824853 (+)
c22h6orf89 LOC107575232,LOC107671520,LOC107750683,LOC107698307,LOC107569747,LOC107723024,LOC107578153 coding downstream 32128 834074 ~ 839760 (+)
znf76 znf76,LOC107722821 coding downstream 38613 840559 ~ 846884 (+)
LOC122327930 LOC107698305,LOC107575490,LOC107722797,LOC107750682,LOC107671569,LOC107576489 coding downstream 58383 860329 ~ 870764 (+)
cry3b cry1bb,LOC107570678,LOC107698304,LOC105900053,LOC107103492 coding downstream 78241 880187 ~ 891663 (+)
G147984 NA non-coding upstream 49161 749048 ~ 749647 (+)
G147898 NA non-coding upstream 72562 724669 ~ 726246 (+)
G147982 NA non-coding upstream 76225 718919 ~ 722583 (+)
G147938 NA non-coding upstream 221427 559745 ~ 577381 (+)
G147923 NA non-coding upstream 245110 552946 ~ 553698 (+)
LOC122328050 NA non-coding downstream 23205 825151 ~ 829115 (+)
G148002 NA non-coding downstream 90643 892589 ~ 893223 (+)
G148033 NA non-coding downstream 207444 1009390 ~ 1011636 (+)
G148219 NA non-coding downstream 248739 1050685 ~ 1050910 (+)
G148226 NA non-coding downstream 381574 1183520 ~ 1190524 (+)
G147888 LOC107732183,LOC107723096,LOC107572363,LOC107698292,LOC107750676,LOC107656899 other upstream 4802 791234 ~ 794006 (+)
G147985 LOC107723118,LOC107656907,LOC107572366 other upstream 47299 750279 ~ 751509 (+)
G147896 NA other upstream 72041 726400 ~ 726767 (+)
G147937 NA other upstream 139194 653880 ~ 659614 (+)
G147956 NA other upstream 175441 622483 ~ 623367 (+)
G148214 wdr77 other downstream 213833 1015779 ~ 1016667 (+)
G148233 LOC107571167,LOC107662825,LOC107663547 other downstream 323540 1125486 ~ 1127230 (+)
LOC122327965 NA other downstream 335771 1137717 ~ 1148802 (+)
G148222 NA other downstream 577345 1379291 ~ 1384847 (+)
LOC122328040 NA other downstream 820046 1621992 ~ 1880883 (+)

Expression


Co-expression Network