LOC122327930 (LOC107698305,LOC107575490,LOC107722797,LOC107750682,LOC107671569,LOC107576489)


Basic Information

Item Value
gene id LOC122327930
gene name LOC107698305,LOC107575490,LOC107722797,LOC107750682,LOC107671569,LOC107576489
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 860329 ~ 870764 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223619.1
GAAGATGTCTGAATGCATTTTGGTTCGACTGTACATTAATCTGTGTTTctttcaggagaaacatctcagaCAAAGCaggttttgtcctttttttggTTTGGCGAGTGAAAATGGCGCACCTGATGAATTACTAAAGCAGCAGCGCAGCTCCTTGTTTAGGGACGCCGCACACACTcaactttaatactttaatgcTAGGACTAGTGATGAGTTCGTTAATTAATTCCCctcattaattaaatgcatatttatgtcTTCAGAGCTCTGATTGAACGACGAAGACCCAGTCCACCAGCGTCTGAAGAGGGCCGAACCCCGCCAGCCAATCAGCTCTGGCTCTCCGTTAACAGACGCGGGTGCCCGGCCAATCGCAGCGGGGAAGGGGCAGAGGTGGGCGGGGCCTGAGTGCTGGAGTGTCGGTGTTCTTGAGCAAacgctcagagagagagagagagagagacagcgctTCGTTCGTCCGCCCGCTTCTGCTGCACGTCTCTCTCACTgcagctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatgtatgCCGGCAGCGGCTGTGTGGCTCCTTCATCACCTTCATCTTCATCGGTGAATTCTCAGCATCGGTGCACAATCCTTCTCATCTGTTGCCGTGGTGATGGGCTGTCGACTGTCAGGGCCGTGGATGGGCGACGGGATGGGGGTTCACGGTCGGGATCTGACCCACCTGCAGAAGCGAGAGGCCTTCCGTATCCTGGCCAGCTACGAGCAGCCAATCACGCTTCAGATTGAGGGCCGGGGGCGGAGCCTGCAGTACAACCGGACGACGGACTGCAGTACGCAAACGGAGCGTCCGTGGGACCCTCTCCGGCCACACTCGTGCACCCTGCCGCGACCGCCTCCCTCAGACAGGACGTACTACAATCACATGACCCTGCCAGGGACCCGTAGAGACGGAGGCAGGTACGAGTACTTACCAAACACGCCCAGAGACCTGGAGCACAGAGAACAGAGACTGGCCTACAACGACCCGGAGTTCTCCAGCGGCGTGTCTCAGGGACAGAACTGTCTGATCGGATGCTGCAACACCAACCTGGACGAGCCCAGAAGTTTCCAGAGCCAGactgatgacgATGACTACATGATGGAGAAGCCCCTGGGTTACCTGCCTCTTCATCACGAGCTGGACAGCGGGCTGGGCTGGACGGACGGTAGCTTCCACCAGGGCGAGCTGTCGGGCGTGGAGACAGAGGAGGGCCTCGAGGAGCGCCACGGCGGGTCGCCGTCCTCGGAGTCCTTCATCTCGTCTGAACTGAGCGACTCGGGTTTCTACAGCGTCAGCACGGGCGAGTTTCTGCGTTTCCAGCGTCTGCTGGAGAAACGCATGCGCCATTACAACGCCCGCATGCACCACCAGGGGGAGCCGTGCTCCCGCGAGCGACGCGACAGCCAGATTAAACATCCCCTAGAGGCCATCCCCGAAACGCTGACGGTGCAGCCTCAAAACGTCTGCACGCCCGTCCTGGGGTCACGTGGTTTGTCGCGCGTCTCGTCCGTGCAGTACCGCAAGGCGGAGCGCCCATGTTTGAACAGGCACAGTTCCAGCAGCGGCTCGCTCTTCACTCCCGCGCCTCACCCCAGTTCCGCAGGGATGCTGAGAAGAAGCAGGACGCTGCATCACCGCCCAGCGCCAATGGAGTACCGCAGACGGGCGAGTCACCCAGCCTCGCCCAACTACTGCAGCGCTACGCTGCATCCCTGCGTCCACAGGGTCAACCTGCCCATGAACCTCCCCGAGGAGCCGAACCTGGCACTTATGCATGTCGTCGCACACCCTGTTGTACACCCCGCTGCACACCCTGCTGCACATCCCGCTGCACTCCCTACACAGACTCTACATGCAATGAGTCAACCGTCCCTGATCCCTCCAGTGGACGAACACTGCTGCACGACGCCAGATCTCCACGCCAGTGGCAGGATCCGAGCATCCACCGAACCGCAGCTCCAGATGAGCTTCGTGACCCAACAGACACCCAGCAACAGGTTCCACACTCTGAGTCACACTCCCAGTCAGGACGCCAACGAAACCTGGCCAAAACCCGCCAACCGAGCGGCATCCGTTGGCGGAAGTGGACTCTACAGCACCTTGGAGGGCCACACGCCCGCTAGGAAGCCACCCGCCGGGAATCCACGCGCTTTGCGGAACCAGATGCTGCGCGATCGAGCGTCCCGATTGGCGGACGAACGCAGCGGCATGAGCACGGACGAAGAGAGTCACAACGAGGTCCGAATGGGTCGCTACTGGAGCCGCACCGAGCGTCGCGAACACATGCTGCAGAAACAGCGACACGCTAGAAGCAGCGGCAGCGGCGTAGCTGTGTCGGGGTTGGTGCATAGTAGCGGAATCGTGGGAGGTGCTAACAGAGACAGTTGTAATACCGTTCTCGAGCTGAGCCAGAGGAAGCTCAGTCGCTTGAGGAACCGGAAGCTGCTTGACGACTGGACCACCGTAGAGGAACTCCTGACGCACGGAACGCGGCTGGGCGCCAGCGAAGACGCCTTGCAACTCCCTACGTCGTTGCTCACTGTCACAACTGTATAGCGACGCCCACTTAGTGCGTGTTCAAATtgactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggactggCCGCACTACACAAAGCTACCTCCTGACATTGAGGTTTACTGTAGATACAGACGATTCCGAACACCGTAgtacattgatttttaaatgttatatttgcaGTATCTTGTTTTGCATTGTGTTGTGAAGAGATGTTTTATTAGGGAGTGAATTCACTGCAGTTTGATTCGACCGCATGAAGCAATACAACAGATACGGACGCCAGACAAAACGAATTTCATTTGGTGCCAAGAAAAGTTTACGTTACGGATCATTTTAAAGGTGGTGCTAACCGTGAGATTTAATTTCGTCGACATGATTTGCAACTAGCCTGTCAACGACATCCGAATTGCATCACTTTTGCACAAAATTTAAAGAATTCCCTTTCCGACTGTCTTCCTCTAGCTAATTTGTGGCGTTAGCACAGCCCCTCCTCCTTTCAATCATCAATCTGATTCTCTGGGAATAATATCGGATAATCTATGGACGGATGGGGAGTCGGATACGCAGGCCGGCGGTTGGGAGCTCAAGGTTATGCTGGAGATCAGGCAGCGGaaacatgagtgtgtgttgtgAAGTGTGCGGGTTCTTGCACTATAACTGTAGTTCTGTAGAgtatttttaaagctatttttctCGTGCTCTTCACAATTGATgtcacaaaaagaaacaaagaactTTTATAAAGACTCGAAGAAGAATTCTAAGTGGTTTTAACGGAAGTACAACAGTTCGTAGAGAAGTGCAAATTCATCAGATATTTTCAGCACACCTTTCCGCAGACACCAAGGTTTCAACTTTACAGAAAGCCTCGCGGAACGGATTCTGCGCGAGCTGCTGAGCCGAACGAGCCGAACGATGGCGTTCTGAATGATTCACACGGATTCGTTCTTGCTCACGTTTCGCGAACGAGACCTAATTCTTTTCCAAAGCAGAATATGCATAAGTATTTTTGGAGTCACCTGTGTCAGCGTGGGATGTTTGCGGATCTCTTTTGTCTTCTCTGAGCAGAAAATCAGGATTTTTCCCACCTGCACTATTTTTGGTGCACGAGCACTGGAGTGTTTACAATTTTTCCTCACAACTGTGACTCTGCGACACGTCTCGCTCTCTCGCCGCCGTTTCTGAGGTGAAATCACGTCATTTTCGCCGCGACTCAAACGCTGTGAATAATGGATGTGGACGGATGGAACATCTTCCCGTACGGATTAACAGAAAAACTCTGCCTCTCTCATTGGATTTTGCTCGTTTCcacttttagaaataattttcttGGGATATGATGTACATGTGGTTGTAATAAAGATGAAATTTTAATTAGCTACA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase PDZRN3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223619.1 True 3974 mRNA 0.54 5 860329 870764

Neighbor

gene id symbol gene type direction distance location
znf76 znf76,LOC107722821 coding upstream 13445 840559 ~ 846884 (+)
c22h6orf89 LOC107575232,LOC107671520,LOC107750683,LOC107698307,LOC107569747,LOC107723024,LOC107578153 coding upstream 20569 834074 ~ 839760 (+)
gpr37l1a LOC107722870,LOC107671519,LOC107698308,LOC107569763,LOC107750705 coding upstream 35476 820399 ~ 824853 (+)
elf3 elf3,LOC107572362,LOC107569764,LOC107656900 coding upstream 58383 798808 ~ 801946 (+)
pth4 LOC107723108,LOC107750679 coding upstream 69182 788463 ~ 791147 (+)
cry3b cry1bb,LOC107570678,LOC107698304,LOC105900053,LOC107103492 coding downstream 9423 880187 ~ 891663 (+)
dennd2db dennd2db,LOC107698300,LOC107750687,LOC107570675,LOC107667626,LOC107572545,LOC107726521 coding downstream 35966 906730 ~ 914014 (+)
stk38b stk38b,stk38,LOC107667630,LOC105900354,LOC105016867 coding downstream 56133 926897 ~ 935512 (+)
def6b def6b,LOC107667628,LOC107750690,LOC107570683,LOC107698284 coding downstream 94485 965249 ~ 972710 (+)
pparda ppard,pparda,LOC107667629,LOC107710804,LOC107698299,LOC107570682 coding downstream 102576 973340 ~ 983002 (+)
LOC122328050 NA non-coding upstream 31214 825151 ~ 829115 (+)
G147984 NA non-coding upstream 110682 749048 ~ 749647 (+)
G147898 NA non-coding upstream 134083 724669 ~ 726246 (+)
G147982 NA non-coding upstream 137746 718919 ~ 722583 (+)
G147938 NA non-coding upstream 282948 559745 ~ 577381 (+)
G148002 NA non-coding downstream 21825 892589 ~ 893223 (+)
G148033 NA non-coding downstream 138626 1009390 ~ 1011636 (+)
G148219 NA non-coding downstream 179921 1050685 ~ 1050910 (+)
G148226 NA non-coding downstream 312756 1183520 ~ 1190524 (+)
LOC122328044 NA non-coding downstream 465354 1336118 ~ 1338916 (+)
G147888 LOC107732183,LOC107723096,LOC107572363,LOC107698292,LOC107750676,LOC107656899 other upstream 66323 791234 ~ 794006 (+)
G147985 LOC107723118,LOC107656907,LOC107572366 other upstream 108820 750279 ~ 751509 (+)
G147896 NA other upstream 133562 726400 ~ 726767 (+)
G147937 NA other upstream 200715 653880 ~ 659614 (+)
G147956 NA other upstream 236962 622483 ~ 623367 (+)
G148214 wdr77 other downstream 145015 1015779 ~ 1016667 (+)
G148233 LOC107571167,LOC107662825,LOC107663547 other downstream 254722 1125486 ~ 1127230 (+)
LOC122327965 NA other downstream 266953 1137717 ~ 1148802 (+)
G148222 NA other downstream 508527 1379291 ~ 1384847 (+)
LOC122328040 NA other downstream 751228 1621992 ~ 1880883 (+)

Expression


Co-expression Network