RNA id: TU218611


Basic Information

Item Value
RNA id TU218611
length 554
lncRNA type sense_over
GC content 0.49
exon number 3
gene id G147938
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 559745 ~ 577381 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgagagagagaaagtgtgtgtgtgtgcatgttggGGGAGGGTCTTGAGGGGGTTTAATGACTCCCAGATGTGAGCTGCAGCATAtgcttcaacacacacacacacacacacacacacacactgaggaatgtctgcacgcacacacacaaacacacacacaactattatttacattcagtgtgtgtttctgttaaaCAGATCTATATATGCGTGTTCAAGAAGCGTCTGAATCTTTCATTCTTCATGACGACCTCGTCTCACCGGGGGTCAgaaaaaatgagagagagagagagagagaaaaagagagagagaaagagagagtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctctgtgtgtgtgtgtgtgtgtgtgagtctgaccCTGTTTAGTGTGTCACTCAGCTGTCTGTTCTCGGTCTCCATCATCTGTCGGTCTGCTGTCTCTTGCTGGAGAGACTCTCTCAGAGATGCTAGTTCAGCTCGGAGAGAAGACGCCCGGCGCTCAGACTCCTCCCACAGCTGctgactgacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218596 lncRNA upstream 6047 552946 ~ 553698 (+) True G147923
TU218619 lncRNA upstream 28211 530567 ~ 531534 (+) True G147942
TU218612 lncRNA upstream 37023 522459 ~ 522722 (+) True G147939
TU218573 lncRNA upstream 88200 471068 ~ 471545 (+) True G147905
TU218562 lncRNA upstream 100227 457710 ~ 459518 (+) True G147897
TU218688 lncRNA downstream 141538 718919 ~ 722583 (+) True G147982
TU218563 lncRNA downstream 147288 724669 ~ 726246 (+) True G147898
TU218691 lncRNA downstream 171667 749048 ~ 749647 (+) True G147984
XR_006247765.1 lncRNA downstream 247770 825151 ~ 829115 (+) True LOC122328050
TU218713 lncRNA downstream 315208 892589 ~ 893223 (+) True G148002
XM_043223696.1 mRNA upstream 874 555883 ~ 558871 (+) True sdhb
XM_043223697.1 mRNA upstream 874 555883 ~ 558871 (+) False sdhb
XM_043223686.1 mRNA upstream 64596 484527 ~ 495149 (+) True prkar2ab
XM_043223694.1 mRNA upstream 75706 477387 ~ 484039 (+) True slc25a20
XM_043223614.1 mRNA upstream 82546 472214 ~ 477199 (+) True LOC122327927
XM_043223673.1 mRNA downstream 25062 602443 ~ 605509 (+) True LOC122327960
XM_043223593.1 mRNA downstream 46371 623752 ~ 630500 (+) True LOC122327913
XM_043223592.1 mRNA downstream 46378 623759 ~ 630500 (+) False LOC122327913
XM_043223594.1 mRNA downstream 46382 623763 ~ 630500 (+) False LOC122327913
XM_043223596.1 mRNA downstream 46383 623764 ~ 630500 (+) False LOC122327913
TU218544 other upstream 134279 423001 ~ 425466 (+) True G147885
TU218530 other upstream 201433 357928 ~ 358312 (+) True G147874
TU218528 other upstream 210565 348259 ~ 349180 (+) True G147872
TU218512 other upstream 211568 345925 ~ 348177 (+) True G147868
TU218651 other downstream 45102 622483 ~ 623367 (+) True G147956
TU218610 other downstream 76499 653880 ~ 659614 (+) True G147937
TU218561 other downstream 149019 726400 ~ 726767 (+) True G147896
TU218692 other downstream 172898 750279 ~ 751509 (+) True G147985
TU218551 other downstream 213853 791234 ~ 794006 (+) True G147888

Expression Profile