RNA id: TU218551


Basic Information

Item Value
RNA id TU218551
length 997
RNA type TUCP
GC content 0.48
exon number 2
gene id G147888
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 791234 ~ 794006 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCAAAAcaatacagttttatttgttttccaaaaCTGTGAAAGTAGCTCCCagagtaatgtttttatttatttattgcttgcaCAATATTTGCAATTTCATAAACGGCTGCAccattattttcagtttaaatgaagTGAGGGTTTGTGCTCTGACCAGCGTGAATATAAAACGATAAATAACGTGAAGCTGACGTTCAGAATATAAAACTGCACGAAATAAGAAAGGTGTCACACCTAAAGAGAAACCACATTCAGACATAGAACCAATTATTAAAAGTACAAATCCTCTTTTCTTCACAGGAATACAGAAAACATGGAAGTACTGAATGAATCTGTGAGGATTCCCGAACACAACGAATCTGGATgtaaagaatgtaaaaacatttctGGTGTAGGTGAAGTCCAGCGGCTTCATCATGCGCAGCTTGCAGCCGGCGGCCGCCAGCGCCTTCAGCCCCGCCCTGATCTCAGGCTCCTCCCACTCGAAGAGCCGCGCCGAGAAGATGGACAGACGCACGCTCTTGCGGGCCCTCAGGACCTCGGCCAGCTTCAGGGCGCAGGAGGCGCAGGGGCTGGACGACATGTACCAGGTGACGGTGTACTTGAGGGCCGGGTCGTAGCTGGGCAGGACCTGCTGGAAGAAGGCCTCCTCGGCGTGAGCGCTCGCGTGCTCGTCCTCGATGAAGCCCCGCAGGAGCCCGCTGGCCCCGGGCCCCTGGTCCACCAGGTAACACAAGAAGGTTTTGTTCCGGCCGGAGGAGTACTCCACGTTCTTGTACTGGAACTTGTAGAAAAACGGGTCCATGCGATCCCTGTGGACACACGAGGACATCAgatcaaaagatttttttttcaatatttcatgtatGTTTTAACAAacctaatattaaatataaaacgtaTATTTTGCGATAAAAACAGCCCTGCAATTGAAATGTTCGTTTATGAATCAGTGTGCTGGATCAAGCGGAGCCGAATCAGAGCCGGTCCTCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218691 lncRNA upstream 41587 749048 ~ 749647 (+) True G147984
TU218563 lncRNA upstream 64988 724669 ~ 726246 (+) True G147898
TU218688 lncRNA upstream 68651 718919 ~ 722583 (+) True G147982
TU218611 lncRNA upstream 213853 559745 ~ 577381 (+) True G147938
XR_006247765.1 lncRNA downstream 31145 825151 ~ 829115 (+) True LOC122328050
TU218713 lncRNA downstream 98583 892589 ~ 893223 (+) True G148002
TU218746 lncRNA downstream 215384 1009390 ~ 1011636 (+) True G148033
TU219024 lncRNA downstream 256679 1050685 ~ 1050910 (+) True G148219
TU219058 lncRNA downstream 389514 1183520 ~ 1190524 (+) True G148226
XM_043223740.1 mRNA upstream 87 788463 ~ 791147 (+) True pth4
XM_043223618.1 mRNA upstream 22697 761669 ~ 768537 (+) True usp49
XM_043223718.1 mRNA upstream 29706 758715 ~ 761528 (+) True med20
XM_043223629.1 mRNA upstream 42825 739761 ~ 748409 (+) True nuak2
XM_043223630.1 mRNA upstream 42825 742360 ~ 748409 (+) False nuak2
XM_043223671.1 mRNA downstream 4802 798808 ~ 801946 (+) True elf3
XM_043223648.1 mRNA downstream 26393 820399 ~ 824853 (+) True gpr37l1a
XM_043223691.1 mRNA downstream 40068 834074 ~ 839760 (+) True c22h6orf89
XM_043223692.1 mRNA downstream 40069 834075 ~ 839760 (+) False c22h6orf89
XM_043223647.1 mRNA downstream 46553 840559 ~ 846884 (+) True znf76
TU218692 other upstream 39725 750279 ~ 751509 (+) True G147985
TU218561 other upstream 64467 726400 ~ 726767 (+) True G147896
TU218610 other upstream 131620 653880 ~ 659614 (+) True G147937
TU218651 other upstream 167867 622483 ~ 623367 (+) True G147956
TU218544 other upstream 365768 423001 ~ 425466 (+) True G147885
TU219018 other downstream 221773 1015779 ~ 1016667 (+) True G148214
TU219065 other downstream 331480 1125486 ~ 1127230 (+) False G148233
TU219066 other downstream 331595 1125601 ~ 1127230 (+) True G148233
XR_006247738.1 other downstream 343711 1137717 ~ 1148802 (+) True LOC122327965
XR_006247739.1 other downstream 343711 1137717 ~ 1141809 (+) False LOC122327965

Expression Profile