RNA id: XR_006247759.1


Basic Information

Item Value
RNA id XR_006247759.1
length 1679
lncRNA type read_through
GC content 0.39
exon number 3
gene id LOC122328044
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1336118 ~ 1338916 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGACTTCTGAATTCTGTTTCTCCAAAATAACATCGTCTCAACTACTGCGAAGACACAGGGTCCTGTTCAGGACATGAGGAACATCTGATGATCTTCAGTGACACAAAGATCtcagagaaaagaagaaagagatgaGTCTCTCAAAGAAACCGAGGTGCTGATATAAATTTGTCGTATAGCCACGTGACATAACAACCTTTAAACTTTGTACCTCTCTCTGCGTAGTGTCAGCAATCTTAAAGACAATATTGTGCCACATAACAGAGAAAATATCATGTAGTGATAAATGAATTACCAATATAAGTATATTAACTactagtaaaataataataaggtgAGAGATTAGACAGATTTACAGAAGATCTAGCAGGTCCAGGTTCTGCTGTAAACCATGTTGAGAAGGAGACAGAAGCAGATCATCTGATCTGTGAGTTGTGTTGAGTGAGGCAGCGGCTGACCGTTCAttgatgtaaatgttaaataatgttgtTCTTCAGCAGCTCCTCTCTCACTCCACACTCCTGGGAAAGATACCTTGTACATTTGGTGATGATAATGACACCATAAttatgttctgtgtatattgATTTAATGAGAGCATAGGTTTTACCTCCTGTGCCACTTTCAATAAGGTTGTAAAACAGATCTTGGTGCCAAATTGAGTCagaattgtttatatttttaccttttgtcTTGGTGAAGATGTTTTTCAAGAAGTAATattgtcacgaatgaggggcctgaggcgtgcggatacatatgcaggcttttattaaagtaaggcatggtcaaaacaggcaggcgtcaaacagggcaaacagatgtataagaGGCGAGGCAAATACAAAATCCAAGAACAGGCgaaggtcgggtcaggcagcaaacaatcacagaatctaaagacaggcagggtcaaaaccaagagaACTAAGACTAAGGAAACTCGggaaacaacaatagaacaggcgaaacaatgcaacctgcaggtgagtggcttgctgcagactttatagtcctggaacaggaagttgtcgcagagggagtgaatgcagatcacccagaggtcaggactccctctgctggcttggtgacaaatATGTAGATGTGATCAGATTTACAGCAGTTTGGTAAAAATAAGATTTGACTTATCTCAGATTGTGTGTGGTTATGAAGTCTAATAGatcataatacataataatagaTGTTTATTATGCTACAGAATCATTTTTCCTCACAAAGATGTTTCTGTAGATGTTAGGATCAAATTAATCATTCATCATTATCAGTCCTTTATCAACCCATGTTTTTTTGGAATGCGCTGACCGAGAAAATTGTgttatttagttagttatttgtgttatttagtgttattaagacatttttaacagataagcaaattagatttttagagtttaattataaaaatgtaacgtctccgttccctccaTTATGGAATAAGTGCTCcctatctgtcagtcactatgaaatttggcaagtggttaactaatcatGAGCTACTCCCCATCACGCGGGTATAAATAGGCCACAGGTGTTGCAGATTTTGCTTGGGAGCCCAGTGCTGCATGGTTGCTGTACTAGCACTTTTGCTAGCGGAAAAAGCTGGAAAAGGAACTGTTTGTGTGGCGGTTTGACACAATCACTGGCGTCCCTGTTTG

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219058 lncRNA upstream 145594 1183520 ~ 1190524 (+) True G148226
TU219024 lncRNA upstream 285208 1050685 ~ 1050910 (+) True G148219
TU218746 lncRNA upstream 324482 1009390 ~ 1011636 (+) True G148033
TU218713 lncRNA upstream 442895 892589 ~ 893223 (+) True G148002
XR_006247765.1 lncRNA upstream 507003 825151 ~ 829115 (+) True LOC122328050
TU219094 lncRNA downstream 1321 1340237 ~ 1359295 (+) True G148251
TU219099 lncRNA downstream 39983 1378899 ~ 1428291 (+) True G148255
XR_006247753.1 lncRNA downstream 62929 1401845 ~ 1405144 (+) True LOC122328038
TU219102 lncRNA downstream 65489 1404405 ~ 1406107 (+) False LOC122328038
TU219106 lncRNA downstream 71001 1409917 ~ 1417452 (+) True G148260
XM_043223744.1 mRNA upstream 51004 1274434 ~ 1285114 (+) True LOC122328020
XM_043223745.1 mRNA upstream 107535 1222696 ~ 1228583 (+) True LOC122328021
XM_043223685.1 mRNA upstream 194976 1137717 ~ 1141142 (+) False LOC122327965
XM_043223827.1 mRNA upstream 200013 1134471 ~ 1136105 (+) True LOC122328116
XM_043223674.1 mRNA upstream 211188 1122850 ~ 1124930 (+) True LOC122327961
XM_043223713.1 mRNA downstream 83443 1422359 ~ 1423773 (+) True LOC122327991
XM_043223602.1 mRNA downstream 98875 1437791 ~ 1445372 (+) False LOC122327918
XM_043223604.1 mRNA downstream 100310 1439226 ~ 1445372 (+) False LOC122327918
XM_043223603.1 mRNA downstream 100526 1439442 ~ 1445372 (+) True LOC122327918
XM_043223613.1 mRNA downstream 163597 1502513 ~ 1508321 (+) True LOC122327926
XR_006247738.1 other upstream 187316 1137717 ~ 1148802 (+) True LOC122327965
XR_006247739.1 other upstream 194309 1137717 ~ 1141809 (+) False LOC122327965
TU219065 other upstream 208888 1125486 ~ 1127230 (+) False G148233
TU219066 other upstream 208888 1125601 ~ 1127230 (+) True G148233
TU219018 other upstream 319451 1015779 ~ 1016667 (+) True G148214
TU219053 other downstream 40375 1379291 ~ 1384847 (+) True G148222
unassigned_transcript_2534 other downstream 93389 1432305 ~ 1432377 (+) True trnam-cau_116
TU219150 other downstream 283076 1621992 ~ 1880883 (+) True LOC122328040
TU219153 other downstream 285556 1624472 ~ 1625190 (+) True G148295
XR_006247737.1 other downstream 287646 1626562 ~ 1639006 (+) False LOC122327950

Expression Profile