RNA id: unassigned_transcript_2534


Basic Information

Item Value
RNA id unassigned_transcript_2534
length 73
RNA type tRNA
GC content 0.60
exon number 1
gene id trnam-cau_116
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1432305 ~ 1432377 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTCGTTGGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACACGGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219099 lncRNA upstream 4014 1378899 ~ 1428291 (+) True G148255
TU219106 lncRNA upstream 14853 1409917 ~ 1417452 (+) True G148260
TU219109 lncRNA upstream 14853 1411088 ~ 1417452 (+) False G148260
TU219111 lncRNA upstream 14853 1411088 ~ 1417452 (+) False G148260
TU219113 lncRNA upstream 14853 1415305 ~ 1417452 (+) False G148260
TU219055 lncRNA downstream 57022 1489399 ~ 1546893 (+) True G148224
XR_006247763.1 lncRNA downstream 59067 1491444 ~ 1492481 (+) True LOC122328048
TU219151 lncRNA downstream 189615 1621992 ~ 1880171 (+) False LOC122328040
XR_006247755.1 lncRNA downstream 189616 1621993 ~ 1622838 (+) False LOC122328040
TU219148 lncRNA downstream 190515 1622892 ~ 1624279 (+) False LOC122328040
XM_043223713.1 mRNA upstream 8532 1422359 ~ 1423773 (+) True LOC122327991
XM_043223610.1 mRNA upstream 85754 1312013 ~ 1346551 (+) True LOC122327924
XM_043223744.1 mRNA upstream 147191 1274434 ~ 1285114 (+) True LOC122328020
XM_043223745.1 mRNA upstream 203722 1222696 ~ 1228583 (+) True LOC122328021
XM_043223685.1 mRNA upstream 291163 1137717 ~ 1141142 (+) False LOC122327965
XM_043223602.1 mRNA downstream 5414 1437791 ~ 1445372 (+) False LOC122327918
XM_043223604.1 mRNA downstream 6849 1439226 ~ 1445372 (+) False LOC122327918
XM_043223603.1 mRNA downstream 7065 1439442 ~ 1445372 (+) True LOC122327918
XM_043223613.1 mRNA downstream 70136 1502513 ~ 1508321 (+) True LOC122327926
XM_043223716.1 mRNA downstream 159783 1592160 ~ 1596619 (+) True LOC122327993
TU219053 other upstream 47458 1379291 ~ 1384847 (+) True G148222
XR_006247738.1 other upstream 283503 1137717 ~ 1148802 (+) True LOC122327965
XR_006247739.1 other upstream 290496 1137717 ~ 1141809 (+) False LOC122327965
TU219065 other upstream 305075 1125486 ~ 1127230 (+) False G148233
TU219066 other upstream 305075 1125601 ~ 1127230 (+) True G148233
TU219150 other downstream 189615 1621992 ~ 1880883 (+) True LOC122328040
TU219153 other downstream 192095 1624472 ~ 1625190 (+) True G148295
XR_006247737.1 other downstream 194185 1626562 ~ 1639006 (+) False LOC122327950
TU219247 other downstream 422496 1854873 ~ 1857135 (+) False LOC122327951
unassigned_transcript_2538 other downstream 697692 2130069 ~ 2130141 (+) True trnam-cau_117