LOC122328048


Basic Information

Item Value
gene id LOC122328048
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1491444 ~ 1492481 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247763.1
cagaaagagaaaagacaatGAATCAGACAGGGACAAGTATTTTCATGAAACATTACAAGAGTCTAttcattttttgaaataaattgtgGACCCATTTACATCAATGATATTAAGCATTGAAATGTTGCTGATATTGATTTccataataaactaataatgatACTAATTCTAGtttcttcattttgaaatgtgtgttcatcagtagatCACTTAGGTGTTTCACTCCAGAATCTCTGAGTTTATTCCAACTCAGGTCCAATTCTCTCAGATGTGATGGttttgatttcagagctgaaggCACAGCAGAACAACCTTCATCTGTCAAACCACAGCTGCTTAACCTActttgagagaaagagagacgtcACACTTCATTCAGTTTAATtgaaataacactttattttatgcgTGAATGTTTCTGACTTTAATTTTTTCCAGTTTACAGTGTGAATACTTCATTTTGTCACATAAGTGATCCActcctgttttctttttttgattccAACTTTCTAGTTTAATTTCTCTCAGGTGTGGTGCGTTTGTTTTCATAGCTGAAGTCGGGATGAGACACTGTTTCTCTGTAATACCACATCTACAGAgagtgaagaaagaaagagaaaagacaatGAATCAGAAAGGGACAAGTATTTTCATGATACATCACAAGGgtccatttatttttggaaataaaGTCCAATTCTCTACGGTGTGATGAGTTTGATGTCAAAGCTGAAGACACAGCAGAACAACCTTCATCTGTCAAACCACAGCTGCTTAACCTATACTGAGAGCAAGAGAAATGTTGATGTTTATTGTATCTATTGCTGATGTTAATTTCCATAATAAACTAATCATGATACTAATTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247763.1 True 868 lncRNA 0.34 2 1491444 1492481

Neighbor

gene id symbol gene type direction distance location
LOC122327918 LOC107710809,LOC107574827,LOC107667624,LOC107698297,LOC107575765,LOC107570670 coding upstream 46072 1437791 ~ 1445372 (+)
trnam-cau_116 NA coding upstream 59067 1432305 ~ 1432377 (+)
LOC122327991 NA coding upstream 67671 1422359 ~ 1423773 (+)
LOC122327924 LOC107566706 coding upstream 144893 1312013 ~ 1346551 (+)
LOC122328020 LOC568664 coding upstream 206330 1274434 ~ 1285114 (+)
LOC122327926 LOC568664 coding downstream 10032 1502513 ~ 1508321 (+)
LOC122327993 NA coding downstream 99679 1592160 ~ 1596619 (+)
LOC122327916 LOC107750708 coding downstream 189213 1681694 ~ 1687771 (+)
LOC122327989 LOC107749583,LOC107659620,LOC107655406,LOC107706642,LOC107690524 coding downstream 350802 1843283 ~ 1845298 (+)
LOC122328118 NA coding downstream 381738 1874219 ~ 1876084 (+)
G148255 NA non-coding upstream 63153 1378899 ~ 1428291 (+)
G148260 NA non-coding upstream 73992 1409917 ~ 1417452 (+)
LOC122328038 NA non-coding upstream 85337 1401845 ~ 1406107 (+)
G148251 NA non-coding upstream 132149 1340237 ~ 1359295 (+)
LOC122328044 NA non-coding upstream 152528 1336118 ~ 1338916 (+)
G148299 NA non-coding downstream 150629 1643110 ~ 1644215 (+)
G148312 NA non-coding downstream 207423 1699904 ~ 1777171 (+)
G148316 NA non-coding downstream 215957 1708438 ~ 1782010 (+)
G148319 NA non-coding downstream 223716 1716197 ~ 1727485 (+)
G148323 NA non-coding downstream 237143 1729624 ~ 1736041 (+)
G148222 NA other upstream 106597 1379291 ~ 1384847 (+)
LOC122327965 NA other upstream 342642 1137717 ~ 1148802 (+)
G148233 LOC107571167,LOC107662825,LOC107663547 other upstream 364214 1125486 ~ 1127230 (+)
G148214 wdr77 other upstream 474777 1015779 ~ 1016667 (+)
G147888 LOC107732183,LOC107723096,LOC107572363,LOC107698292,LOC107750676,LOC107656899 other upstream 697438 791234 ~ 794006 (+)
LOC122328040 NA other downstream 129511 1621992 ~ 1880883 (+)
G148295 NA other downstream 131991 1624472 ~ 1625190 (+)
LOC122327950 NA other downstream 134081 1626562 ~ 1639006 (+)
LOC122327951 NA other downstream 362386 1854867 ~ 1857142 (+)
G148388 NA other downstream 651404 2143885 ~ 2145560 (+)

Expression


Co-expression Network