LOC122327916 (LOC107750708)


Basic Information

Item Value
gene id LOC122327916
gene name LOC107750708
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1681694 ~ 1687771 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223598.1
TTGAAATGGAAACATATGCAGTAGCAGCAGATGGAAGTAATCTAGAATCTGACTGTACTAACATGAGAGATCTGAAGATCATTCTGATAGGAAAGAATGTATCAGAAAACAACAGAGTGGAAAACAGTATACTGGGAAGAACGGCGTTTCACAGAGAAGCTGCATCTTCCTCACAGCAGTACAGCAGAATCAGTGGAGAGGTGGAGGAGAGAAAGACCACAGTCATTAACACCGACCTCCTTGAGACGAATCTTTCCCAGCAGCAGATCACAGAGGcagtgagtgagtgtctgtctgCTCCGGGACCTCATGTGTTTGTTCTCGTACTGCAGTATAAGGACTTCactgagaaagacagagacagagtgAAATATGTGCTGAACCTCTTCAGTAAACAGGCCGTGAAACACACTATAGCGCTGACCACCGATGAAGAGCCACATAGATTGAATTTCTTTACTAGAAACAACGTTATTCATGGTTTGATAAAGGAGTGTGGAGGAGGACATCTACAGTCTGACACAGGATGGCGGTGTGAAATGTTCAGAAGGACAGAAGAGATGCTCAAGACAGAATGTGAAGAAGAGATGTATTCTTCTAAGAGCAAAACAACAGCAAGCGATGGAGTGACAACTGCCGAAAAAGCAAAGCTGAACATTGTGCTGTGTGGAAATGATTCAGCACTCAAGAACAGAGTGTCTAAAATGTTTACAGAGACAATAAATCAGACGGAGAGCAAGAAGACGGAAGAGATGATAGAAGGATGGCACATCAGCCTACTAGAGCTTCCAGCTCTGTTCAACACTCAGCTCTCAGAGGAGGACGTGATGCGTCAGACTCACcgctgtgtgtctctctgtcatCCTGGAGTTCATGTTTTCATCTTCATCGTTCCTGATGCTCCACTGACTGAtgaagacagagcagaaatagAGGAGATCCAGAGGATCTTCAGCTCAAGAATCAACAAACACATCATGATCCTCATAAAGCAGAACTCAGATCATCAGGCAGCAGAACTAAATGAAGAAACACAGTCTGCCATTCAGAGTTTAGGAGGACGACATCATTTCATTGACCTGAACACACAAGTGTCTGTGTTGATGGAGAAACTGCAGCAGATGGTCGAGGAAAACAGTGCTGTTTGTTTCTCCACAGAGACACTGATGGAAGCACAGATGGAAAAACTGCTGAAATTTGATGAAATGAAGAGGAAAATCCATTCATTAGAGACGAGGTTTCAATCACAAGATTCAAGAGACAGAGAAGATGAACTGAGGATTGTGCTTCTGGGAAAAACTGGATCTGGAAAGAGTTCAACTGGAAACACCATCTTAGGAGCAGTCAAGTTTGCAGCTGAAACATCTCAAGAGTCTGTTACTACAGTGTGTCATAGAGAGACAGCTGAAATCAACAGCAGAAACATTACTGTGATCGACACTCCAGGACTGTTTGATACTAAACTCAGCAATGAAGAAATCAAGAGAGAAATCAGCAACAGCATCCCCATGATCCTGCCCGGACCCCACGTGTTCATCATTGTGCTCAATTTAGGACAGCGGTTCACTCAAGAAGAGAAAACAGCGGTGAAGATCATTCAGGAGACGTTTGGAGAACACTCTGTAAAGTACACCATGGTGCTCTTCACCAGAGGAGACTTTCTGAAGAAGAAAACCATTGATCAGTTTCTGGGAGAACCTGGATCAGCTTTGAATCAGTTGATTGAAGTGTGTGGAAACAGATACCATGTGTTCAATAACGAGACTAAAGACCAAACTCAGGTGACTGATCTCCTGCAGAAGATAGACAACATGGTGAAAGAGAACGGAGGGAGTTACTACTCATGTAAGATGttcagagagatggagagagaaataCAAGAACAACAGAAGAACATACTGATGGAGAAAATGGAGAAactaaacagagaaagagatgaactgatgaacaaacatgaagaagaaaaagagaggatgaggatgaagatggaggaagaggatgaggaaaggagaaagaaagaacaggCGATGTGGGATGAACATAATCAGAGACttaaaggagagagagagagaatggaaagagagaaaaacgaTCTTCAATCTAAACATGAACAAGAGAAAGAACGAATAAATATGATaatggagaaagaaagacagaatcATGatcaagagagaaagagaatagaAGAGGAATATAAGGACAGAGAAGAACAATATAAATCAGACATGAAAACAGAGCGAGAGGAATGGGAGAGACAGAAACAAGAAGCAAGACGAAAAAGAGCTGAAGATGAGGAGAGAAGAATCACATTAGAAaaggaaacacaggaaaaaCATGTCAGGGCCCTTAAACAAGAGAGAGAACAGATGGGGAAGAAGatggaggaagaaagagagaatagtgaaaaagagaggaaaaaaagagaagaggaatttgaagaaagagaagaacggtacaaaaaagacattaaagacaCAGAGGAACAAGAGAGAAAGATACGAGAAGAGATGAAGAAAGAATGGGAGGAATGGGAGAAACAGAATATAAATATCAAAGTTAATTTACTAAAAGACCTGTATAATGGTTCAACATGAGGGTCCTTCATGTAATCAGTTGTATATCTCAGTTGTTAACCCTATTGTTGTCATTTTCAGAATCAGATTCAGGATGTTTGAGAATCTTGCTGCTTGGTAGgacaggaag

Function

NR:

description
PREDICTED: inner centromere protein A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223598.1 True 2703 mRNA 0.42 5 1681694 1687771

Neighbor

gene id symbol gene type direction distance location
LOC122327993 NA coding upstream 85075 1592160 ~ 1596619 (+)
LOC122327901 LOC107745441 coding upstream 160487 1161343 ~ 1521207 (+)
LOC122327926 LOC568664 coding upstream 173373 1502513 ~ 1508321 (+)
LOC122327918 LOC107710809,LOC107574827,LOC107667624,LOC107698297,LOC107575765,LOC107570670 coding upstream 236322 1437791 ~ 1445372 (+)
trnam-cau_116 NA coding upstream 249317 1432305 ~ 1432377 (+)
LOC122327989 LOC107749583,LOC107659620,LOC107655406,LOC107706642,LOC107690524 coding downstream 155512 1843283 ~ 1845298 (+)
LOC122328118 NA coding downstream 186448 1874219 ~ 1876084 (+)
LOC122328120 NA coding downstream 199840 1887611 ~ 1891509 (+)
LOC122328023 irf6 coding downstream 213995 1901766 ~ 1907032 (+)
eps8l3a LOC107662821,LOC107711382,LOC107571173,LOC107725338,LOC107698279,LOC107599104 coding downstream 220314 1908085 ~ 1915043 (+)
G148299 NA non-coding upstream 37479 1643110 ~ 1644215 (+)
G148224 NA non-coding upstream 134801 1489399 ~ 1546893 (+)
LOC122328048 NA non-coding upstream 189213 1491444 ~ 1492481 (+)
G148255 NA non-coding upstream 253403 1378899 ~ 1428291 (+)
G148260 NA non-coding upstream 264242 1409917 ~ 1417452 (+)
G148312 NA non-coding downstream 12133 1699904 ~ 1777171 (+)
G148316 NA non-coding downstream 20667 1708438 ~ 1782010 (+)
G148319 NA non-coding downstream 28426 1716197 ~ 1727485 (+)
G148323 NA non-coding downstream 41853 1729624 ~ 1736041 (+)
G148330 NA non-coding downstream 59160 1746931 ~ 1792301 (+)
LOC122327950 NA other upstream 42688 1626562 ~ 1639006 (+)
G148295 NA other upstream 56504 1624472 ~ 1625190 (+)
G148222 NA other upstream 296847 1379291 ~ 1384847 (+)
LOC122327965 NA other upstream 532892 1137717 ~ 1148802 (+)
G148233 LOC107571167,LOC107662825,LOC107663547 other upstream 554464 1125486 ~ 1127230 (+)
LOC122327951 NA other downstream 167096 1854867 ~ 1857142 (+)
G148388 NA other downstream 456114 2143885 ~ 2145560 (+)
LOC122327475 NA other downstream 1271329 2959100 ~ 2963003 (+)
loxl5a loxl5a,LOC107698563,LOC107549379,LOC107733348,LOC108430202,LOC105011451 other downstream 1356867 3044638 ~ 3048132 (+)
LOC122327293 myo9b,LOC107566354,LOC107702620,LOC107549373,LOC107698595,LOC107718479 other downstream 1426430 3114201 ~ 3153581 (+)

Expression


Co-expression Network