RNA id: XM_043223387.1


Basic Information

Item Value
RNA id XM_043223387.1
length 1408
RNA type mRNA
GC content 0.51
exon number 11
gene id impact
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2156235 ~ 2183233 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATACTGTAACCCGGAAGTGCTGTGAGTGTCTCGCCGTGTGTGAAGAGCTGGCTGTGAGTTGTTTTGGAGTTTTTCGCTCCTGTAAGATCTCCTCTCCGCCGTCTCGAGCGTCGCTGTCAGTGCACGACCACACACATCAGAGTCAGGAACACCGTCGCTGTGTCTTTAAGTCTCCTCGGCCCGGCGATGCGCGCGCGCCATTAGATGGACGCGTCAGAGGAGCGCGATGACGCGGACCTGCGGGCTCAGatcGAGGAGATCGAGGCTCTGTCCTCCATCTACTCAGAGGAGTGGTGTGTGATCGACGAAGCGGCCAGAGTTTTCTGCATCCGAGTCTCAGACGACTCCCAGAAGCCCCGGCTGACGCTCTGTTTACAGatCATTCTTCCTCCGGACTACCCGAGCTCCGCGCCGCCCGTGTATCAGATCAACGCCGGCTGGCTCCGAGGACCGGACCGAACCGCTCTGTCCAACAGTTTAGAGGAgctGGAGAATACAGGAGAGAGTATTCTGTATCTGTGGGTGGAGAAAATACGAGAATTCCTCGTGGAAAAATCACAAAGTTCAGaTGGACCTGAAATGAGTAAGACGGTGACGGAGGAAGAAGGTAATGACTACGACGAGGACGATATTCCTGACTACGGCACGCTAAAACTCAGCAACCAATCAGCTCAGCTCTTTTCTAGCTCTTCTGATGaTGAAGAATTGCCGCTGATTAAACACGGGGAGACAATCACGGACAGACGGAGCACGTTCCAGCCTCATTTAGCCGCGGTGGTGACTCCTAAACAGGTTCAAAGGGTTCTGAATCATTTATACGAAAACAAGAAGATCGCAAGCGCCACTCACAATATCTATGCATACAGGATCTACTGTGAGGATAAAAAGTCTTTCCTGCAGGACTGCGAGGACGACGGAGAAACGGCAGCAGGGGGCCGACTGCTCCATCTCCTGCAGATCCTGGACGTGCGTGACGTTCTGGTGGTGGTCTCTCGGTGGTACGGAGGGATCCTGCTGGGCCCCGACCGCTTCAAACACATCAACAACTGCGCCAGGAACATCCTCCTTCAGGAGGGGTACACCGACGCTTCAGAGGAAACATCCAAAGCTGGAGGCAAGAACAGGAGACCTAAGGGCAAGAAGGCAAAATGAAAGACCTTCCTGGAACAAATGAAACCTGGACTGAAGATAGACTGGCGACTACGAACGCTCAAGGAAtcttgacaaataaaataaaccgaACATGCTGTAATAGTGATCGGTAAAAGCATTCAGTGTTGCGATGAGGGTTAAACAACTTCATACCAAAAATGGTTCTGTGTTCAGTTGAGTTTAATGGCCTGTTGCTGCACATTATCACACACTAAGTGCTTTGTCTTatgaataaagatttttatgAATTACAAA

Function

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219335 lncRNA upstream 3061 2151775 ~ 2153176 (+) True G148406
TU219327 lncRNA upstream 12165 2143101 ~ 2144072 (+) True G148403
TU219328 lncRNA upstream 12502 2143101 ~ 2143735 (+) False G148403
TU219318 lncRNA upstream 13887 2140507 ~ 2142350 (+) True G148402
TU219424 lncRNA downstream 155673 2338819 ~ 2340411 (+) True G148452
TU219958 lncRNA downstream 335784 2518930 ~ 2519142 (+) True G148742
TU220005 lncRNA downstream 587629 2770775 ~ 2787036 (+) True G148781
TU220009 lncRNA downstream 587629 2770775 ~ 2837949 (+) False G148781
TU220010 lncRNA downstream 587629 2770775 ~ 2828831 (+) False G148781
XM_043223939.1 mRNA upstream 8432 2146685 ~ 2147805 (+) True cep19
XM_043223712.1 mRNA upstream 36171 2106766 ~ 2120066 (+) True zgc:174224
XM_043223711.1 mRNA upstream 36171 2118973 ~ 2120066 (+) False zgc:174224
XM_043223578.1 mRNA upstream 51196 2054359 ~ 2105041 (+) True LOC122327908
XM_043222313.1 mRNA downstream 5191 2188337 ~ 2199001 (+) True LOC122327129
XM_043223357.1 mRNA downstream 35123 2218269 ~ 2220804 (+) True rpl36
XM_043223355.1 mRNA downstream 49447 2232593 ~ 2240963 (+) True ftsj3
XM_043222366.1 mRNA downstream 58253 2241399 ~ 2244815 (+) False lim2.2
XM_043222367.1 mRNA downstream 58459 2241605 ~ 2244815 (+) True lim2.2
TU219297 other upstream 10677 2143885 ~ 2145560 (+) True G148388
unassigned_transcript_2538 other upstream 26096 2130069 ~ 2130141 (+) True trnam-cau_117
TU219247 other upstream 299102 1854873 ~ 1857135 (+) False LOC122327951
XR_006247737.1 other upstream 517231 1626562 ~ 1639006 (+) False LOC122327950
TU219153 other upstream 531047 1624472 ~ 1625190 (+) True G148295
XR_006247636.1 other downstream 861492 3044638 ~ 3047776 (+) False loxl5a
XR_006247629.1 other downstream 931056 3114202 ~ 3152565 (+) False LOC122327293
XR_006247630.1 other downstream 931056 3114202 ~ 3152436 (+) False LOC122327293
TU220335 other downstream 1040482 3223628 ~ 3224490 (+) False tma7
TU220341 other downstream 1046121 3229267 ~ 3235787 (+) False dnase1l4.2

Expression Profile