ftsj3 (ftsj3)


Basic Information

Item Value
gene id ftsj3
gene name ftsj3
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2232593 ~ 2240963 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223355.1
GTGCACTGACGTCATCTCTCGGCGTCGCAAAAAAATACACGTGCGGCCGGAGTCTGCGAGGTGTCCGAGAGAGCGAAGAAACTGAGCCGAAACCATGGGGAAAAAACTCAAAGTCGGGAAAACCAGGAAGGACAAATTCTACCACCTCGCGAAAGAAACAGGTTATCGCTCCAGATCGTCGTTTAAACTCATTCAGCTCAACCGGAAGTTCCAGTTTCTTCAGAAAGCTCGCGCTCTGGTGGATCTGTGCGCGGCTCCCGGAGGATGGTTGCAGGTGGCGTCGAAGTTCATGCCGGTGTCCAGCCTGATCATCGGTGTGGATCTGGTGCCGATCAAACCCATCCCGAACGTGGTCACGCTGCAGGAGGACATCACCACGGAGAAGTGCAGACAGGCCCTCAGGAAGGAGCTGCAGACCTGGAAGGTGGACGTGGTGCTGAACGACGGCGCGCTGAACGTGGGAGCCAACTGGCAGCACGACGCGTTCTCGCAGGCTAACCTGACTCTGATGGCGCTCAAGCTGGCCTGCGAGTTCCTGACCAGAGGAGGCACCTTCATCACCAAAGTCTTCCGCTCCAAAGACTACCAGCCCCTGATGTGGATCTTCCAGCAGTTCTTCAAGAAGGTGCAGGCCACCAAACCCCAGGCCTCCAGGAACGAGTCGGCCGAGATCTTCGTCGTCTGCCAGGGGTTTTTGGCTCCGGATAAAATCGACAACAAGTTCTTCGACCCCAAACACGCTTTCAAAGAGGTCGACATACAAGTGAAAACTGTCAAAGAGCTGGTCAGCACTAAAAAGCCCAAGGCTGAAGGCTACAGCGATGGCGATCTCACTCTGTATCACACCTTCTCAGTGACCGAATTCTTAAAAGCAGAAAACCCGGTCGATTTCTTGAGCAAAGCCAATAAAATAACCTTCGATAACCCCGAGCTGGAGTCTCACCCCATCACTTCACCAGAGATCAGAGAGTGCTGCACCGATATTAAAGTCCTGGGCCGAAAGGAACTGCGTCTGCTGTTGTCGTGGAGATCCAAGCTGAGGAAGTTCCTGGCTAGAAAGCTGCGACAGGAAGCCAAACAGCTGCAGCAGGAAATGAGCTCGGACGACAGCGATAGCGATGGCGATGTCGACGAGAAGGAGAGCAAGAGAAAGGGAGGCGAGCCGAAGGATGAGGAGGACGGTGAGGAAGAGGAGCTGGAGAAGAAGCTAGCGCTGATGAAGGCTGAAGAGTTCGCCGAACTCAAACGgaagaagaagaagctgcTGAAGGAGAAGCGAAAGCAGAGAGAGCGAGTGGAGCTGAAGATGGATCTCCCCGGCGTCTCTATCGCTGAAACCAGCGACTCCTCCGTGTTCTCTCTCAACGCCATCAAGAAGGCCAAGggacTGAGTGAAATCACGCAGGGAGACATGAAGGATGCCGATGCTTtagtggaggaggaggaagaggacgaCCTGCACATCTCTGACGAAGACGAGGATGAAGACGAGCGCATGTCTCTGGCCTCTGAACTCGACTCGGACGATCTCGAGGAGAtccagaagaaagagaaagaaatcgAGGAAAAGATGCCTAAGAAGAAAAAAGTTTCGTTCGCAGGCGAACCGCAGGACGAAGAAGCAGCGAAAGGGAATGAGTTAATCGTTGAACTGGAAGGAAAAGACGAGAAGCGAGATCGCGAGACCGACATGTGGTTCAGCAAGGACATCTTTGCCGAGCTGGATTTGGATGGCGACGCCGATGCCTTGAGCGAACTGAAACAAACCCAGCTTCTGCAGACCAAAAAAGGCcaaaagagaaaagcagaggAAGCGGAGGCGGAGCCTGTCGTGAAGGAACAGGAAGTGGCCGCACCCTCGCAGGAAGTAAATGCAGACGACGACGACTCCGATGACGATGACACCAGCGATGATGAGATAGATATTGCTCAAATGAAACAAGCTTCGCCGGCCATTGACGCGATGGATGATGACAGCTTTCAAGTCGTTCCAGTTGAAAAAATAAACAAACGTGCACGAATTCTCAATGCGGAGGGTTTGGCTCTCGGCGCTCAGATCGCTACGTCCAAAAAGCGAGCGCGAGACCTAGTCGACGGCTCCTTCCATAGGTTTGCGAATTCTGAGGATATGACCGAAGTTCCCGCCTGGTTCGTTGACGACGAAAAGAAGCACAGAAAGAGGCCTGTTCCCGTCACTAAGGAAATGGTGGAAGAATACAAGCAGAAATGGCGGGAAATCAACGCCCGGCCGGTCAGACGCGTCGCAGAGGCCAAAGCGCGCAAGAAGAGACGGACCTTGAAGAAGATGGAGCAGGCCAAGAAGAAGGCCGAGGCTGTGGTGAACACGGTGGATATTTCCGAGCGAGAGAAGGTGGCTCAGCTCAAGAGCATCTACAAGAAGGCGGGCGTTGGAAAGGAGAAGAGAGAGGTCACGTACGTCGTGGCTAAGAAGGGCGTAGGACGCAGGGTGCGCCGGCCCGCCGGAGTCAAGGGTGCTTTCAGAGTGGTGGACGGACGCTTGAAGAAAGACACTAGAGCCACGCAGAGGAAGGAGCAGAGGGGGAGGGGCAAAAAAGGGCGTGGTCAGAAAGGAGGACGGGGGATGAAGGCAGGAAAAGGACGCGCGAATAAAAATTGATAGACCACGGTCTTTTCCTGGTTCAGACTGATTGATTGAGCCGCTCGTGTCGTTTGCGACTCTGTAGCGCTATACGTTAAACTACTCGTCCAGCCCCGCCCTTTCGTTACCTGCGACACGCCGTTTTGCTCAAACTTTGACAAAAATAAGTGTTTCAGCAATCGGACGAGGCTCAGACTGAGGTTTTCAGCGTTGTTCTAATGCTGTGTTTTCATGTCTAACGTATACTTCGTGGTATATGAACGTCAGGCGTATTCGCCTACTTCCTGACCTTTCCGAATTAATTATGCCAGTTTATATGTGAGAAATATGTTTGGAGTGTGTgccacattttaaataaatacaaactgaaTGACAA

Function

symbol description
ftsj3 Predicted to enable rRNA (guanine) methyltransferase activity and rRNA (uridine-2'-O-)-methyltransferase activity. Predicted to be involved in maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and rRNA methylation. Predicted to act upstream of or within methylation and rRNA processing. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; immature eye; mesoderm; midbrain; and musculature system. Orthologous to human FTSJ3 (FtsJ RNA 2'-O-methyltransferase 3).

NR:

description
pre-rRNA processing protein FTSJ3

GO: NA

KEGG:

id description
K14857 SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223355.1 True 2996 mRNA 0.53 19 2232593 2240963

Neighbor

gene id symbol gene type direction distance location
rpl36 rpl36,LOC106560598 coding upstream 11789 2218269 ~ 2220804 (+)
LOC122327129 hrh4,LOC107678092,LOC107559824,LOC107548836,LOC107679085,LOC103041953 coding upstream 33592 2188337 ~ 2199001 (+)
impact impact coding upstream 49360 2156235 ~ 2183233 (+)
cep19 NA coding upstream 84788 2146685 ~ 2147805 (+)
zgc:174224 NA coding upstream 112527 2106766 ~ 2120066 (+)
lim2.2 lim2.2,LOC107562091,LOC107679082,LOC107744653,LOC107678104 coding downstream 436 2241399 ~ 2244815 (+)
gipc3 gipc3,LOC107678090,LOC107559818,LOC107562094,LOC108424935,LOC108270865 coding downstream 31093 2272056 ~ 2279729 (+)
ticam1 NA coding downstream 508288 2749251 ~ 2752252 (+)
timm44 timm44,LOC107561596,LOC107660209,LOC107704494,LOC108441293 coding downstream 511678 2752641 ~ 2759437 (+)
LOC122327634 ctxn1,LOC108441290,LOC106573568 coding downstream 529791 2770754 ~ 2784530 (+)
G148406 NA non-coding upstream 79417 2151775 ~ 2153176 (+)
G148403 NA non-coding upstream 88521 2143101 ~ 2144072 (+)
G148402 NA non-coding upstream 90243 2140507 ~ 2142350 (+)
G148401 NA non-coding upstream 93834 2138263 ~ 2138759 (+)
trnam-cau_117 NA non-coding upstream 102452 2130069 ~ 2130141 (+)
G148452 NA non-coding downstream 97856 2338819 ~ 2340411 (+)
G148742 NA non-coding downstream 277967 2518930 ~ 2519142 (+)
G148781 fbn2b,ctxn1,LOC107549363,LOC107742800,LOC107704489,LOC108441290,LOC106573568 non-coding downstream 529812 2770775 ~ 2837949 (+)
LOC122327636 NA non-coding downstream 565640 2806603 ~ 2856084 (+)
G148830 NA non-coding downstream 749322 2990285 ~ 2992412 (+)
G148388 NA other upstream 87033 2143885 ~ 2145560 (+)
LOC122328040 NA other upstream 351710 1621992 ~ 1880883 (+)
LOC122327475 NA other downstream 718137 2959100 ~ 2963003 (+)
loxl5a loxl5a,LOC107698563,LOC107549379,LOC107733348,LOC108430202,LOC105011451 other downstream 803675 3044638 ~ 3048132 (+)
LOC122327293 myo9b,LOC107566354,LOC107702620,LOC107549373,LOC107698595,LOC107718479 other downstream 873238 3114201 ~ 3153581 (+)
tma7 NA other downstream 982654 3223617 ~ 3224491 (+)
dnase1l4.2 LOC107549369,LOC107718466,LOC107712178,LOC107698583,LOC107566352,LOC107702653 other downstream 988304 3229267 ~ 3238958 (+)

Expression


Co-expression Network