lim2.2 (lim2.2,LOC107562091,LOC107679082,LOC107744653,LOC107678104)


Basic Information

Item Value
gene id lim2.2
gene name lim2.2,LOC107562091,LOC107679082,LOC107744653,LOC107678104
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2241399 ~ 2244815 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222366.1
AGACTGGCGGGATTGTGAGGAGCGGGAGGACGAGATGCTGTGAAAGATGCGGATTACCTCACACCTCACATGTCTGACTGGATGATTCGCTCTATTGTGGCCCGAACAATGACGGCCGGGCGCGGTGGGCTTAAAACCCCCAGAACCGCGCGCACGGAGCGCAATCTTCGCGGGAGACGGGCAGCAACCGTCAGAGAGGAGGGCGTTCCGATCCTCTGATGGCGTTCACTCTGGTGGGCGGGGCCTCTCTGTGTGGAGGGGCGGCCCTCGTGCTCCTCGTCATCTCCACGGCTACTGACTATTGGATGCAGTATCGCTACTCAGGGAACGCAGCCAATCAGGGCCTCTGGAGGTTCTGCATCAATCGCAAGTGCCACGCCCACACGCTGACCGTGGCATTCTGGGACGCCACGCGGGCCTTCATGCTGCTGTCGGTGCTGGGCTGCTTCGCTGGAGTGCTCCTGGGGGTCACCGCGTCCAAACGGCCCCGGAGCCGACGGGTGCGGAGCGGAGGCATCGCCCTGCTGCTGTCCgGATTTCTTGCGCTCTTGGCTCTGGCGATCTACACCGGCATGACCGTCAACTTCTTCGGCAAGCGCTACATCGACTGGAGGTTCTCGTGGTCTTATATCTTGGGTTGGATTGGCATCATATTGGCTTTTGGAGGAGGCGTCCTGCAGCTCTGTGCTCATCAGAGGAGCGTCTCTGAACCGGCGCCGGCGAGCGTCTCCGAcagctgagacacacacacacacagagacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>XM_043222367.1
AGATAAACGGGGTGTCTATTAACTTGATTCGAGCCTTTTAACACGCCTTTACTCGCTCcgttaagtgttttaaaaggaAAGTTCGTTGCCGTTTGAGGGGAGTCTTGGAATGATTTGACCGTTACGCTCgtcttttaaatcttaaaacCGCGGGAACAAAAGCGCGGCTTGTTCTCCGTGACCGTTCGCGATGCGTTTATGGTGCGTTTTGCGAGTTTCATCGTGAATGGCTCTCTTATTTGTCTGTGAATgagtgatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttggcagCGTTCAGCTGTAGTTTGAAATGTGCTGATCCTGTTTGTGCTGCGCAAACGCTTCGCATTCAGAACGCTCTCGTGATGAACGGGTGAAGTTTGATTGATCGGCTCGATTCGAGCCAAATGCTGATCGCACAGAACGGCTTTTGTTCATAAACGGGTCGATGGGAGCGGAAGGGAACCGCTGGAGGACCACGGCCAAacgGAGGGCGTTCCGATCCTCTGATGGCGTTCACTCTGGTGGGCGGGGCCTCTCTGTGTGGAGGGGCGGCCCTCGTGCTCCTCGTCATCTCCACGGCTACTGACTATTGGATGCAGTATCGCTACTCAGGGAACGCAGCCAATCAGGGCCTCTGGAGGTTCTGCATCAATCGCAAGTGCCACGCCCACACGCTGACCGTGGCATTCTGGGACGCCACGCGGGCCTTCATGCTGCTGTCGGTGCTGGGCTGCTTCGCTGGAGTGCTCCTGGGGGTCACCGCGTCCAAACGGCCCCGGAGCCGACGGGTGCGGAGCGGAGGCATCGCCCTGCTGCTGTCCgGATTTCTTGCGCTCTTGGCTCTGGCGATCTACACCGGCATGACCGTCAACTTCTTCGGCAAGCGCTACATCGACTGGAGGTTCTCGTGGTCTTATATCTTGGGTTGGATTGGCATCATATTGGCTTTTGGAGGAGGCGTCCTGCAGCTCTGTGCTCATCAGAGGAGCGTCTCTGAACCGGCGCCGGCGAGCGTCTCCGAcagctgagacacacacacacacagagacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

symbol description
lim2.2 Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2).

NR:

description
lens fiber membrane intrinsic protein-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222366.1 False 854 mRNA 0.60 5 2241399 2244815
XM_043222367.1 True 1176 mRNA 0.55 5 2241605 2244815

Neighbor

gene id symbol gene type direction distance location
ftsj3 ftsj3 coding upstream 436 2232593 ~ 2240963 (+)
rpl36 rpl36,LOC106560598 coding upstream 20595 2218269 ~ 2220804 (+)
LOC122327129 hrh4,LOC107678092,LOC107559824,LOC107548836,LOC107679085,LOC103041953 coding upstream 42398 2188337 ~ 2199001 (+)
impact impact coding upstream 58166 2156235 ~ 2183233 (+)
cep19 NA coding upstream 93594 2146685 ~ 2147805 (+)
gipc3 gipc3,LOC107678090,LOC107559818,LOC107562094,LOC108424935,LOC108270865 coding downstream 27241 2272056 ~ 2279729 (+)
ticam1 NA coding downstream 504436 2749251 ~ 2752252 (+)
timm44 timm44,LOC107561596,LOC107660209,LOC107704494,LOC108441293 coding downstream 507826 2752641 ~ 2759437 (+)
LOC122327634 ctxn1,LOC108441290,LOC106573568 coding downstream 525939 2770754 ~ 2784530 (+)
cers4a cers4a,LOC107561597,LOC107717160 coding downstream 623273 2868088 ~ 2875916 (+)
G148406 NA non-coding upstream 88223 2151775 ~ 2153176 (+)
G148403 NA non-coding upstream 97327 2143101 ~ 2144072 (+)
G148402 NA non-coding upstream 99049 2140507 ~ 2142350 (+)
G148401 NA non-coding upstream 102640 2138263 ~ 2138759 (+)
trnam-cau_117 NA non-coding upstream 111258 2130069 ~ 2130141 (+)
G148452 NA non-coding downstream 94004 2338819 ~ 2340411 (+)
G148742 NA non-coding downstream 274115 2518930 ~ 2519142 (+)
G148781 fbn2b,ctxn1,LOC107549363,LOC107742800,LOC107704489,LOC108441290,LOC106573568 non-coding downstream 525960 2770775 ~ 2837949 (+)
LOC122327636 NA non-coding downstream 561788 2806603 ~ 2856084 (+)
G148830 NA non-coding downstream 745470 2990285 ~ 2992412 (+)
G148388 NA other upstream 95839 2143885 ~ 2145560 (+)
LOC122328040 NA other upstream 360516 1621992 ~ 1880883 (+)
LOC122327475 NA other downstream 714285 2959100 ~ 2963003 (+)
loxl5a loxl5a,LOC107698563,LOC107549379,LOC107733348,LOC108430202,LOC105011451 other downstream 799823 3044638 ~ 3048132 (+)
LOC122327293 myo9b,LOC107566354,LOC107702620,LOC107549373,LOC107698595,LOC107718479 other downstream 869386 3114201 ~ 3153581 (+)
tma7 NA other downstream 978802 3223617 ~ 3224491 (+)
dnase1l4.2 LOC107549369,LOC107718466,LOC107712178,LOC107698583,LOC107566352,LOC107702653 other downstream 984452 3229267 ~ 3238958 (+)

Expression


Co-expression Network