RNA id: XM_043223579.1


Basic Information

Item Value
RNA id XM_043223579.1
length 6794
RNA type mRNA
GC content 0.40
exon number 23
gene id LOC122327909
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1964794 ~ 2053091 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAACTCATCCAGTCTAACTTGCACGTCAGCAGCAGTCCATTCATGCAGCGGCTTACACTTGAATGTAAGAGACAGCTCTGAATCAGGACAGTTCCTGATAAACAATACAGTAACTTCACGAAAGGGGTTATCTAGACTTTTTCCCTGTCTCTTCAATCCTTCCCCAGCGATGTCGATAACATTGTGCAGCCTAATCCAGTAGTCGAATGGCTTCTAGTTTTGCAATGGCAATGTAGTATAAAAATCTGCCAAAGGCATTCATGAATAGACTGTGTCACTACAGTGTTGTTTGAGCAGATCAAAAACTGGCTTTGGACCATTACTGAGGTCGATCAAATGGTTACTTCTCAGTCCAACCTTCACGACATCACATGCTCTGCCCTGCAACTTAGTCAGTACTTCGTCAGCTTGGTCTTTCAAGGGCACTTCacgtttttttcaaatatacttTTACTGCTTCCACCCACTCATCAACAGAAATCTTCCCCTCCCCATCACCACTGAAATATGCAGGTTCATTAACATCATGCTTAACGATTAAGTTGACTTTTGACAGTTCACTCATACTAAAACTTGAgtcattttgtttgttctgGCCAAAAACTCCAGTGTTTAAATCGGCTAATTGGACAGAATCGTCAGAAGCTGCACAAGACTGAGACACAGTAGGTGTCTGCTCATGTACACTTCTTGTGTGAATAGGGGTTGAGAAACCTGGACCAATTTGATCAGCCCCATCAATCTGTATATGGGCAAACCTCAGTACCCCTCTCCCTCTTCCCATACTGTTTTGACCATAAGACACTTCCACAATCAGCTTTTTGAGTACTTCCTactcacttctttttttataatataactataaattaaatgtataacacaaacaaacatatatgaGGACTCATGCAGCTTATAAAACTGCGTGCGGCAGCAATGcacagaactgaaaaaaaagaaaattgtttaaatagtgAAAAATAATCATCGAGGTATCTACTTTGTATTCTATTTTGTATGATCTGTCTGACATTATTCAACAAATCCTTTAAAGTTGACTGGAGAAGATGGGTATTAtctgcaggagagagagaatattGAGTAACAGCAGGTAGCGCTAGAGTACTGATGTAGTGTGTGATCTGCTgttaaaagaagaaagagaaagcaggTGTGTCTGTGCATCACATTCTTGTCCAGTGTGTGCTTAACAGCGATCACAAAACCGAAAGCGTTTTAAAGACTTCTGATTTCTCCAAAATAACATCTTCTCAACTACTGCGAAGACACAGGGTCCTGTTCAGGACATGAGGAACATCTGATGATCTTCAGAGACACAAAGATCtcagagaaaagaagaaagagatgaGTCTCTCAAAGAAACCGAGCTCTGTGTCTGTGAAGAGCGACCAGTCAAAAGGTAATCCACCGGAATTCAGTGAGGAGACACCACCAGCTACTGAAAGTGTAAGATCAAGCTCTCATGTGTCCAGCTTTGCATCTGTGAAAAGTGACCGGTCAAAAGGTCATCCACCGGAATTCAGTAAAGAAAGTGCATCAAATACTCAAAGTCTTCGATATGAAACATTAACTTCAGACATCCAGATTAACAGGaatcacaaaaaaatcacagacaACCTCCTAGGAATCTTTcagAATCTTGAGaagaaaataatcacatttctaaaaaatgaGCTGGAAATGTTcaagaaaatattacagaaagaGAACAAGCAACAATTTGTGGAGGATTTTAATGAGAACAGATGCAGTAACAGAGAAGCAGCTCTTGATCTCACGCTCTACTTCCTGAGAGAGATGAAGCAAGATAGAGCTGCTGATTCTCTAGAAGATGAGCTGATCTTCATTCATCAGCTAAAGTGTAGCCTAAAGAAGAagtataagtgtgtgtttggaggaaTCACAAAGCAAGGAGACTCTACACTTCTGAAGAACATCTACACAGATCTCTATATCACTCAGGGTTGTAGTGAACAGGTCAATACTGAACATGAGGTCAGACAGATTGAAGTTGCTTCCAGACATCACGAAACACAAGAGAAACAGATTGAGTGCAAAAATTTGTTTGAAGCATCTGAACAAGATGAGCAGATCAGAACTGTACTGACAAAAGGAGTCGCTGGCATCGGAAAAtcagtctctgtgcagaagtttgTTCTGGATTGGGCcgaaggaaaagaaaatcaagACATCAGCTTCATATTTCCTcttccattcagagagatgaacttaaaggagaaagaaaaactaagTTTGATGGACCTTTTAACTCAGTTTTTCCCAGAGACGAAAGGTCTGAATCTTACGAGAAGAAATCATTTCAAAGTCCTGTTCATTCTTGATGGATTGGATGAATGTCGACTTCCTCTAAACTTTAAGGATAATGAGATATTGTGTGATGTTTCATCAGCAGCCTCTCTGGATGTTCTCCTAACAAACCTCATCAAGGGAAATCTGCTTccttctgctctcatctggatcaccacCAGACCAGCAGCTGCCAGTAAGATTCCTCCTGAATGTATTGAGCTGCTGACAGAGATAAGAGGATTCAATGATGCACAAAAGGAGGAGTACTTCAGAAAAAGATTCACGGATCAGAATCAGGCCAAAGAAATCATCGATCATGTTAAACAATCAAAGAGTCTCTTtatcatgtgccacatcccagtcttctgctggatttCTGCCACAGTTctccagaacattttagaagagaaaggaaaaaatgtcatgaaaatTAATGAGTCTGAAGATGCCTCCAAAACACTACAGGAGTCAAATACTGAAGACACTCCTAAGACTCTGacacaaatgtacacacactttcTTAGATTTCAGATCCAACAGAGCAGAAGAAAGTATGATGGAGAACACACACCAGATGTTTCCTGGGATAAAGTTGCCATCTTTTCACTGGGGAAACTGGCATTTGATCAGCTGGAAAGAAACAATGTGGTCTTCTATGACACAGATCTGGAAGCCTGTGGTATTGACGTCAATAAGGCATCAGTGTACTCAGGCATGTGTACCCAGATCTTTAAGGAGGAAACAGGGATCGTTCTTGGTACCATGTACTGCTTCGTTCACTTGAGCATTCAAGAGTTTATTGCAGCTCTTTATGCTCATCTGTTTCTGGAcctcaacaaaaaaagtgtgtttgatcAAGACTCTACACAAGAAAACACAAGTGAAATTGATTTCCTTAAGACTGCAGTGGACAAGGCTCTAGAGAGTGATAATGGACACCGAGATCTTTTTCTTCGATTCCTCCTTGGTTTGTCACTCCagtccaatcagagactcttacagGGTCTGTTGACacagaaaaatagaaatgaccAGAGCAAAAAAGAAATAGTTGAGTACATCAAGCAGAAATTTGAAGCTAATCTGTCTCCAGAGAGATCCATCAATCTGTTCtactgtctgaatgaactgaaCGACCAAACTCTGGTGAAAGAGATTCAGACCCACCTTAACAAAGGAAGTCTCTCATCTGCTGACCTTTCACCTGCCCAGTGGTCTGCTTTGGTCTTTGTGTTGTTGACATcagaggaggagctggaggagtttGAGCTTCAGAAATTCAAGAAATCAGACGAGTGTCTCATTAGGTTATCAGCAGTCATCAAAACCTCCAAAAGAGCTCTGCTAAATGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGAATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctgcaggattcaggagtgaagctgctctgcaCTGGACTGAAGGATATTAATTGTACATTAGAGATACTGAGGCTAAATGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGAATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctgcaggattcaggagtgaagctgctctgcaCTGGACTGAAGGATATTAATTGTAAATTAGAGATACTGAGACTCTCAGACTGCAGTATCAGTGAAGAAGGTTATAAAgctctgtcttcagctcagatcaaaccttCACACCTGATAGAGCTGGATCTCATAGGAAATGATCCTGGATCATCAGGAGTGAAGAAGCTCAGTGTTTTACTTCAGGATCGTAACTGTCAACTAAACACACTGAGGTTTTTGGGTCCTGCTGCAGATGAAGGCTGTCAGTATGTGACTGGAATCGTGGGTAAAAACCCGTTACTCCTGAAAGAGCTGAATCTGAGTGGACATAAACTAGGAGACACACGAGTGAATCAGATCTCTGCTCTACTGCAGGATAAACACTGTCAGATCAACACACTGAAGCTAAATGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGGATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctgcgggattcaggagtgaagctgctctgcaCTGGACTGAAGGATATTAATTGTACATTAAAGATACTGAGGTTGTGTGATTGTGGTTTAACAGAGGAAAGCTGTTCAGCTCTTGCTACAGTCCTGATATCAAATTCCAGTCTGAAAGAGCTTGACATGAGCAACAAtaatctgcaggattcaggagtcaAGAAACTCAAGAACGCTTTAGAAAATACAGAATGCACATTGGAGAACCTCAGaCTCTCAGACTGCAGTATCAGTGAAGAAGGTTATAAAgctctgtcttcagctctgagatcaaacccatcACACATGATAGAGCTGGATCTCATAGGAAATGATCCTGGATCATCAGGAGTGAAGGAGCTCAGTGATTTACTTCAGGATCCTAACTGTCAACTAAACACACTGAGGCTAAATGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGAATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctacaggattcaggagtgaagctgctctgcaCTGGACTGAAGGATATTAATTGTAAATTAGAGATACTGAGGCTAAATGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGAATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctgcaggattcaggagtgaagctgctctgcaCTGGACTGAAGGATATTTATTGTACATTAAAGATACTGAGaCTCTCAGACTGCAGTATCAGTGAAGAAGGTTATAAAgctctgtcttcagctctgagatcaaacccttcACACCTGATAGAGCTGGATCTCATAGGAAATGATCCTGGATCATCAGGAGTGAAGGAGCTCAGTGATTTACTTCAGGATCCTAACTGTCAACTAAACACACTGAGGTTTTTGGGTCCTGCTGCAGATGAAGGCTGTCAGTATGTGACTGGAATCGTGGGTAAAAACCCGTTACTCCTGAAAGAGCTGAATCTGAGTGGACATGAACTAGAAGACACACGAGTGAATCAGATCTCTGCTCTACTGCAGGATAAACACTGTCAGATCAACACACTGAAtctgTATAGATGCAGtattacagagaaacagagtctcatcctgacttcagctctgaaatcaaacccatcacacctgagagaactgaacCTGAGCTTGAATGAACTCAGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTACAtctgTATGGATGCAGtattacagagaaacagagtctcatcctgacttcagctctgaaatcaaacccatcacacctgagagaactgaacCTGAGCTGGAATGAACTCAGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTACATCTTTATGACTGTGGCATTACAGATGTTTCTTCTTTAACTCAGTGtttgacaaaaacagaaacactgcaGTTTCTAAAAGAGCTTGATCTGAGGTTTAATGAGATCAGAGACTCAAAGCAGCAGCTCATTGATGTGCTACGAGACTCAAACTGTAAACTGAGTGTAGATCAAGATCAAGATCCATCACAAGAAATCCCTGATAGAGTTTCATCACAAGAATTACCTGAAAGAGTTCAGTCActgaaaaatgataaatgctgTATATCATAGTTTGAGATCATCTTGAGAGGAGCTGTAAACATCAGATGAAGATCCACAGAAGAGCTTCACTATGTGTCTATGAGgagaaataaatgtgtgataaatgtttaaatatgattCATACAGGTGTAGAGACTCAGACTTTACAATCAAATAATGCAGCATATGTGTTAGAAACATGATATTGAAtgattaatattgatttaatattcaACCTAATgctcatgtttaatttaaaagctGAAGTGAGTCGGTCTGGCTCTTCAGTTtcgtaatatttgtattaaaaaaggtttggttgttttacttcaatgaatgtttaaaaatttgcatattttgaatACACCTATATTAACCATTAAGAGTTTTCCTCAAACTCCCAGCTTGCTGCTTCCTGTGTCACAGActcttctgttgttgtttttatgttccTCGTTCTCtatgtgacctactttctgttgATTGTCAtcatgttcaggtgtgtcttgttcaTTACGTCATCATGTCTTCCCAATAtaacttcctgtttttttttagtgttaatGGTCCGCTCTTCATCGTAGTTTAATGTGGTTATTTTCTGTCTGTTATTTGCTCCTTTAAGATTAAATACTACTAAGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247758.1 lncRNA upstream 7214 1956214 ~ 1957580 (+) True LOC122328043
TU219238 lncRNA upstream 45971 1917581 ~ 1918823 (+) True G148344
XR_006247766.1 lncRNA upstream 63303 1900192 ~ 1901491 (+) True LOC122328051
XR_006247747.1 lncRNA upstream 70486 1892352 ~ 1894308 (+) False LOC122328033
XR_006247746.1 lncRNA upstream 70486 1892747 ~ 1894308 (+) True LOC122328033
TU219305 lncRNA downstream 64274 2117365 ~ 2118573 (+) True G148393
TU219314 lncRNA downstream 85172 2138263 ~ 2138759 (+) True G148401
TU219318 lncRNA downstream 87416 2140507 ~ 2142350 (+) True G148402
TU219321 lncRNA downstream 87416 2140507 ~ 2142350 (+) False G148402
TU219327 lncRNA downstream 90010 2143101 ~ 2144072 (+) True G148403
XM_043223832.1 mRNA upstream 15427 1942150 ~ 1949367 (+) True LOC122328122
XM_043223831.1 mRNA upstream 24227 1931591 ~ 1940567 (+) True LOC122328121
XM_043223626.1 mRNA upstream 49751 1908085 ~ 1915043 (+) True eps8l3a
XM_043223746.1 mRNA upstream 57762 1901766 ~ 1907032 (+) True LOC122328023
XM_043223830.1 mRNA upstream 73285 1887611 ~ 1891509 (+) True LOC122328120
XM_043223578.1 mRNA downstream 1268 2054359 ~ 2105041 (+) True LOC122327908
XM_043223609.1 mRNA downstream 31318 2084409 ~ 2092095 (+) True LOC122327922
XM_043223712.1 mRNA downstream 53675 2106766 ~ 2120066 (+) True zgc:174224
XM_043223711.1 mRNA downstream 65882 2118973 ~ 2120066 (+) False zgc:174224
XM_043223939.1 mRNA downstream 93594 2146685 ~ 2147805 (+) True cep19
TU219150 other upstream 83911 1621992 ~ 1880883 (+) True LOC122328040
TU219247 other upstream 107659 1854873 ~ 1857135 (+) False LOC122327951
XR_006247737.1 other upstream 325788 1626562 ~ 1639006 (+) False LOC122327950
TU219153 other upstream 339604 1624472 ~ 1625190 (+) True G148295
unassigned_transcript_2534 other upstream 532417 1432305 ~ 1432377 (+) True trnam-cau_116
unassigned_transcript_2538 other downstream 76978 2130069 ~ 2130141 (+) True trnam-cau_117
TU219297 other downstream 90794 2143885 ~ 2145560 (+) True G148388
XR_006247636.1 other downstream 991547 3044638 ~ 3047776 (+) False loxl5a
XR_006247629.1 other downstream 1061111 3114202 ~ 3152565 (+) False LOC122327293
XR_006247630.1 other downstream 1061111 3114202 ~ 3152436 (+) False LOC122327293

Expression Profile