upk3b


Basic Information

Item Value
gene id upk3b
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14694162 ~ 14702051 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921657.2
CCTCCCTTACCATGGGAGGGATGAAATTTAATGGAAAGGCTTTTAAGTGGTAGAACCTGCCAGGTTTGATTCACACAGCATTTTATTACAAGAAGAACAGAGTGTCCTTACTGCTGTTCTCCAGAATGAAGGCCTTCCTAGTAGTCTGTTTGGTGTGTATGATACTCCTTGAGATCTATGCAAGCACTTTGGTTGAATTCACACCAACTCCTTCGTTAGATGTGGCCGTACCAGTCACTACTAAAACTGTGTACCTTCAgaagccattttgtttctttgaCAGTGTCACTGACCCAACCTGTACTGCGGCAAACCCATGTAACGTGTGGCTGGTGGCTGCACTGAGCTCGGCAACAAACATATTTGACAGCAACAAAAGCTCTTCAAGTTTCGTCACCTCCTCTCCGTACCCAACTGCTTTCAAACCTGGCATGATGAATTACTTTGTGACCCAAACTGGTTCTCAGGACAGTTTTCGCTGCCCAGTCTCTGGTACTACTACTTCCTATTTCCTAGTTGGAGCAGAAGGTGCTTGCAGTACTACTAACTGCAATGGTGTGTTGCCTGAAGGCTCTACTATGAGCTTTAAGTATCTTCTTATCAATTCAGGCAACGGACTTGTTGCAGAGACAAAGTGGTCTGAAAACATAACTCTCCAAACCATAAAAAATCCAGACAGTCTTGGTAGTGGTTATGCTGGAAGGTCTGCCGCAATGGTGGTGATCACAGCAATTCTTTGTGTTGCTGCGGCTCTGCTTTTGCTATTGCTGCTCATTGCCTTGATACTGGCCTGCTGCTGCCGCCAAGTGAAAACACAGTCATATGAGGCGAGGCGTCAACCTTCGGTGATAGGATCCCTCCGTATCCCCAGCTACGATGTGCACCACCTGAAGAACCCATCCCCCTACGACAACCCTGCATACGAGCAAGACCTGAAGAAGAGGTACACCAAGACTTCCACCCTACCCCAGAAAACCACCACAGTCATCACCACGGTGCAAACCAACCCTCCGGACACCATCACTCtgcagaaaatgtgaaaaaatgtggaGAAACAGTATGAATTTCATGGCATGCAGAATATCTGATGCTTTAGGGAAATGCCAAATGCCAATGTGGCTAAAAATATGGGAGGTAAAGCACAGCATAAAAGATTACTAACTAGTTTGATGTCTTTAATTCTCTCtgagatttaattttaaaaaattaatgttttactaaaatttttcacatttgatcACCTTTTTCTGATAACGGTCTGATTTGAagatttaactgttaaaattttctttaatagtactattactactactgcaaattttaataataataataataataaaattataatagtagtaataatctttatttaaatagaacagtatttgtatttgtaataaagCTCAATACATCAATTACGAACTTACAGTAAATTTGTAAGTATAAATATACTACATGAAAAAAGGTtgaaaaaaatggctaaatagtaaaatatgataaataactCAAATTAGGTCAGGTTAAACAAGTACATTTTGGTCTGGGTTTACAAATTATAACTTCTTTGAGAAATTGTACAGAACCACTTTgatcaaaaatgctaaaatgggCAAACAATGCATTCAAGCTAGCAGTATGACTTGTTTTATAGTTAATCTCCTCCTTTTTCCCTGGACTGTAATCAAAGAATTTCTACACTATTACCAAAGAGTATATTATAGAAGCGGTATTGGGGCTTAATAGGCAAACATTGGCTGAAACAGTGTACATagcagtaaataaagtaaaggtTTATACAGGGGTGGAtgaagtactgagaaattatacttaaatcaaagtatagataatgtgtcaaagtcttactcaattaaaagtgtatccagccaaaaatgtgctcaaatgaaagtaaaaaagttgctcattttaaatgcattaaaaagtgaaaggtAAATTTTCTAAACTgattaatgtcatgttttcattccAAAAGTAAGTCTATACTCTAaaattgtttgatttgtttttattttgctgtttaattttgcaatatttaccattagctagaagtTAACTTGCTGCCTAACAAATAATGCTAGCTATTTAATCAATGGTAGTGtcacctggcattagcaaagaaaacaagctaacttagttaaatatagccagttaatgttaactagcaaattagcaaaacatttGTCAACATGTCTCTAATTTTCAAATTAGATcgagttcatgccttctagagAGGCAAAAGTTACAGATCATTTGATacaagtctttgcttactccagtaTAATGAAAAATTTTACTTAGGTAGGGCCAGGGGGATTCAattactctactctactctaatTGTACTACGAGGAgtagtacaattactcaagtattttctgCCGTTTGGTTCATAAGACTTGGGTGTAtttaggtagatagatagatagatagatagatagatagatagatagatattctACCTATTCTTTTATTGCCACTGCTTCAGTTATTGAAAATAAGCTTAACTCTaatgtacaaatgtaaaattttaaataacataaGTCAAATATATCAGATATATCAGTAATGTTGGGTACAATAACCCAAAAAGAACAGATACCGAAATGAATGCTGCACTGCTTTTAACTTTCAAGGCAATATGAAATAAATCGAAATGTTTACCAAAACCC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0072046 establishment of planar polarity involved in nephron morphogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921657.2 True 2687 mRNA 0.36 6 14694162 14702051

Neighbor

gene id symbol gene type direction distance location
rasa4 rasa4,LOC108260369,LOC108428505,LOC107744328,LOC107709756,LOC107561580,LOC107691765 coding downstream 4680 14659002 ~ 14689482 (-)
clip2 clip2 coding downstream 41979 14617170 ~ 14652183 (-)
gtf2ird1 gtf2ird1,LOC107600764 coding downstream 79980 14593785 ~ 14614182 (-)
dtx2 dtx2,LOC108260301,LOC102304721,LOC101480294 coding downstream 102206 14580868 ~ 14591956 (-)
tmem132e tmem132e,LOC107691770,LOC107689377 coding downstream 284822 14171302 ~ 14409340 (-)
prkrip1 prkrip1,LOC107600793 coding upstream 2836 14704887 ~ 14709305 (-)
vps37d vps37d,LOC108428528,LOC103041644 coding upstream 17962 14720013 ~ 14745623 (-)
rabep1 rabep1,LOC107664300 coding upstream 55651 14757702 ~ 14777689 (-)
derl2 derl2,LOC106567674 coding upstream 86809 14788860 ~ 14791859 (-)
foxr1 foxr1 coding upstream 222289 14924340 ~ 14927859 (-)
G387048 NA non-coding downstream 353966 14339316 ~ 14340196 (-)
G386873 NA non-coding downstream 763464 13930487 ~ 13930698 (-)
G386868 NA non-coding downstream 777361 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding downstream 778665 13915364 ~ 13915497 (-)
LOC117596230 NA non-coding downstream 817356 13876017 ~ 13876806 (-)
G387277 NA non-coding upstream 168468 14870519 ~ 14877458 (-)
G387434 NA non-coding upstream 496555 15198606 ~ 15204665 (-)
LOC117596201 NA non-coding upstream 518729 15220780 ~ 15234734 (-)
G387465 NA non-coding upstream 579797 15281848 ~ 15282052 (-)
G387467 NA non-coding upstream 580403 15282454 ~ 15282756 (-)
selenow1 LOC103044489 other downstream 1013637 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 1802867 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 2995618 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 3066476 11546309 ~ 11627686 (-)
G384960 NA other downstream 3610221 11078712 ~ 11083941 (-)
ccdc84 ccdc84 other upstream 214611 14916662 ~ 14923390 (-)
nrgna NA other upstream 316842 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 1180287 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 1661443 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 2056189 16758240 ~ 16763476 (-)

Expression


Co-expression Network