LOC113531468 (LOC108260357,LOC108428416,LOC107714896,LOC107691814,LOC107572424)


Basic Information

Item Value
gene id LOC113531468
gene name LOC108260357,LOC108428416,LOC107714896,LOC107691814,LOC107572424
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14057405 ~ 14070855 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300958.1
CCGAATCGTGCGCGAACGACACACGCCTCATTAAGGGGAATGTGAAAATCTCTCGCGCGAGATACGTATAGCgctgaaataaacacatttttcataagaagaaaaaaacgaaatgttttaaaacatgttaaGAAAAGTTGTTGGGGTGACGACAATAGCAGAGTTGAAGATAACGTAGCGTGTCAATTGGCTGAGGCAGACAGTGTTCACTGGAAGTGTTTTTAATGCTCTGGAGGGAGAAAAGTCTGTGGGATCGGAGTCTTTTTGTGTCCCACCTGCTGCCTTATCGTGTGTCTCCAGctttgacctgtgtgtgtgtgggtgtgtgtgggtgtgtgtgttcctgaaaAGAAGAGAGCGTCTTGCTTGACAGTGTCTGCTTGAGTTATGTCCGACACTATGTTTGGTAGCGGGAACCACCAGTGGGTTTGTCCCAATGACCGACAACTTGCTCTGAGAGCCAAACTACACACAGGCTGGTCGGTGCACACGTTCCAGacagaaaagcagagaaaaacCCAGGTGCTGAACAAGAGGGAGCTGGACATCATCCTGAGCGTCATCCACAGAGCCGAACAACTCGACCTGATCGAGCAGCACAGAATCGGGCGTCTGATGGAGCGTTTGGAGAACATGAGAAGGTCAGCAGTGGGGAACGGCCTGTCTCAGTGCCTGCTGTGTGGAGAGGCTCTGGGGCTGCTGGGAACTCCTTCAGTCCTCTGCTTTGATTGCTGCAAGaaagtGTGCACCAAGTGTGGGATTGAGACAGCATGCAGTCAGAAGAGAGCTCAGTGGCTCTGCAAGATCTGTAGCGAACAGAGAGAGCAGCAGTTTAGTGCCTTTGCGTGCATCAAATCAAAGTACAGATCTTGGTTAGATGTAACAGCTGGATTTCGATAA

Function

GO: NA

KEGG:

id description
K19939 RPH3AL; Rab effector Noc2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300958.1 True 900 mRNA 0.49 7 14057405 14070855

Neighbor

gene id symbol gene type direction distance location
LOC113531503 doc2b,LOC107685552,LOC107681901,LOC106603746 coding downstream 68052 13921740 ~ 13989353 (-)
castor2 gatsl2,LOC107685562,LOC107595468,LOC107587690,LOC107681899 coding downstream 148948 13892212 ~ 13908457 (-)
polr2j polr2j,LOC107587688,LOC107595521 coding downstream 195250 13859139 ~ 13862155 (-)
alkbh4 alkbh4 coding downstream 199287 13855219 ~ 13858118 (-)
lrwd1 lrwd1 coding downstream 205122 13843178 ~ 13852283 (-)
tmem248 tmem248,LOC107714897,LOC107572429,LOC107691774 coding upstream 3686 14074541 ~ 14085085 (-)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding upstream 22709 14093564 ~ 14103564 (-)
tmem132e tmem132e,LOC107691770,LOC107689377 coding upstream 100447 14171302 ~ 14409340 (-)
dtx2 dtx2,LOC108260301,LOC102304721,LOC101480294 coding upstream 510013 14580868 ~ 14591956 (-)
gtf2ird1 gtf2ird1,LOC107600764 coding upstream 522930 14593785 ~ 14614182 (-)
G386873 NA non-coding downstream 126707 13930487 ~ 13930698 (-)
G386868 NA non-coding downstream 140604 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding downstream 141908 13915364 ~ 13915497 (-)
LOC117596230 NA non-coding downstream 180599 13876017 ~ 13876806 (-)
G386849 NA non-coding downstream 203350 13853837 ~ 13854055 (-)
G387048 NA non-coding upstream 268461 14339316 ~ 14340196 (-)
G387277 NA non-coding upstream 799664 14870519 ~ 14877458 (-)
G387434 NA non-coding upstream 1127751 15198606 ~ 15204665 (-)
LOC117596201 NA non-coding upstream 1149925 15220780 ~ 15234734 (-)
G387465 NA non-coding upstream 1210993 15281848 ~ 15282052 (-)
selenow1 LOC103044489 other downstream 376880 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 1166110 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 2358861 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 2429719 11546309 ~ 11627686 (-)
G384960 NA other downstream 2973464 11078712 ~ 11083941 (-)
ccdc84 ccdc84 other upstream 845807 14916662 ~ 14923390 (-)
nrgna NA other upstream 948038 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 1811483 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 2292639 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 2687385 16758240 ~ 16763476 (-)

Expression


Co-expression Network